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| Mutant Information |
|---|
| Mutant Name | FN3607-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3607-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26530669 | C-T | Homo | ||
| SBS | Chr1 | 34975675 | G-A | HET | ||
| SBS | Chr10 | 10187515 | C-T | HET | ||
| SBS | Chr11 | 14952169 | T-C | HET | ||
| SBS | Chr11 | 16663719 | C-A | HET | ||
| SBS | Chr11 | 19395122 | G-C | HET | ||
| SBS | Chr11 | 19549020 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g33070 |
| SBS | Chr11 | 20304055 | A-G | HET | ||
| SBS | Chr11 | 25799317 | T-A | HET | ||
| SBS | Chr11 | 3634168 | G-T | HET | ||
| SBS | Chr11 | 5853090 | G-A | HET | ||
| SBS | Chr12 | 10449721 | G-T | HET | ||
| SBS | Chr12 | 13442219 | G-A | HET | ||
| SBS | Chr12 | 2056500 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04810 |
| SBS | Chr12 | 5661205 | C-T | HET | ||
| SBS | Chr12 | 8776163 | A-C | HET | ||
| SBS | Chr2 | 14626305 | C-T | HET | ||
| SBS | Chr3 | 27785563 | G-C | HET | ||
| SBS | Chr3 | 487107 | C-T | Homo | ||
| SBS | Chr4 | 11987306 | C-G | Homo | ||
| SBS | Chr4 | 28813802 | T-C | Homo | ||
| SBS | Chr4 | 3292769 | T-C | Homo | ||
| SBS | Chr6 | 28272821 | C-T | HET | ||
| SBS | Chr6 | 30179384 | T-A | HET | ||
| SBS | Chr6 | 30436203 | G-A | Homo | ||
| SBS | Chr7 | 11481459 | C-T | Homo | ||
| SBS | Chr7 | 11481464 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g19400 |
| SBS | Chr7 | 21044866 | A-T | Homo | ||
| SBS | Chr7 | 28677582 | G-A | Homo | ||
| SBS | Chr8 | 11821485 | C-T | HET | ||
| SBS | Chr9 | 15932587 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26380 |
| SBS | Chr9 | 7831493 | T-C | Homo |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 345018 | 345020 | 2 | |
| Deletion | Chr11 | 6038604 | 6038607 | 3 | |
| Deletion | Chr8 | 7683212 | 7683213 | 1 | LOC_Os08g12920 |
| Deletion | Chr11 | 7867001 | 8409000 | 541999 | 81 |
| Deletion | Chr11 | 8415001 | 8690000 | 274999 | 37 |
| Deletion | Chr4 | 8534995 | 8534997 | 2 | |
| Deletion | Chr11 | 8700001 | 8809000 | 108999 | 17 |
| Deletion | Chr5 | 10811556 | 10811561 | 5 | |
| Deletion | Chr5 | 13287153 | 13287156 | 3 | |
| Deletion | Chr11 | 13631614 | 13631623 | 9 | |
| Deletion | Chr7 | 15107283 | 15107284 | 1 | LOC_Os07g26270 |
| Deletion | Chr8 | 15634249 | 15634250 | 1 | |
| Deletion | Chr10 | 18925465 | 18925489 | 24 | LOC_Os10g35400 |
| Deletion | Chr10 | 20516343 | 20516345 | 2 | |
| Deletion | Chr1 | 22100734 | 22100735 | 1 | |
| Deletion | Chr4 | 28771870 | 28771880 | 10 | |
| Deletion | Chr2 | 29738090 | 29738099 | 9 | LOC_Os02g48570 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 14447578 | 14447578 | 1 | |
| Insertion | Chr5 | 29939605 | 29939629 | 25 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 7207477 | 7867332 | LOC_Os11g14120 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 4757267 | Chr4 | 1178866 |