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Mutant Information |
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Mutant Name | FN3650-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3650-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 31
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 14963186 | C-T | HET | ||
SBS | Chr1 | 27290737 | A-T | HET | ||
SBS | Chr10 | 13826270 | A-G | HET | ||
SBS | Chr10 | 3898739 | C-T | HET | ||
SBS | Chr11 | 3621919 | T-A | HET | ||
SBS | Chr12 | 22007658 | C-T | HET | ||
SBS | Chr2 | 27916382 | C-A | HET | ||
SBS | Chr2 | 29034587 | T-A | HET | ||
SBS | Chr3 | 16999892 | A-G | HET | ||
SBS | Chr3 | 19816560 | G-T | Homo | ||
SBS | Chr3 | 35021399 | T-A | HET | ||
SBS | Chr3 | 6547041 | G-A | HET | ||
SBS | Chr4 | 28426728 | G-A | HET | ||
SBS | Chr5 | 18557626 | C-T | Homo | ||
SBS | Chr5 | 27228857 | T-C | HET | ||
SBS | Chr5 | 29161728 | G-C | HET | ||
SBS | Chr5 | 3917580 | C-A | HET | ||
SBS | Chr6 | 17647371 | C-T | Homo | ||
SBS | Chr6 | 18098369 | C-G | Homo | ||
SBS | Chr6 | 1835804 | G-C | HET | ||
SBS | Chr7 | 11300157 | G-T | Homo | ||
SBS | Chr7 | 14217606 | C-T | Homo | ||
SBS | Chr7 | 20174790 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g33740 |
SBS | Chr7 | 8370025 | T-C | Homo | ||
SBS | Chr8 | 1749639 | C-A | Homo | ||
SBS | Chr8 | 2249293 | C-G | HET | ||
SBS | Chr8 | 2352821 | A-G | Homo | ||
SBS | Chr8 | 3490996 | A-G | HET | ||
SBS | Chr8 | 3809120 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g06820 |
SBS | Chr9 | 16035433 | G-C | HET | ||
SBS | Chr9 | 16533613 | G-T | HET |
Deletions: 24
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 3030943 | 3030947 | 4 | |
Deletion | Chr4 | 5954006 | 5954019 | 13 | |
Deletion | Chr6 | 6065521 | 6065528 | 7 | |
Deletion | Chr11 | 6269936 | 6269941 | 5 | |
Deletion | Chr4 | 6576699 | 6576701 | 2 | |
Deletion | Chr10 | 9609919 | 9609943 | 24 | |
Deletion | Chr7 | 9800188 | 9800207 | 19 | LOC_Os07g16710 |
Deletion | Chr11 | 10024566 | 10024568 | 2 | |
Deletion | Chr1 | 11761637 | 11761639 | 2 | LOC_Os01g21080 |
Deletion | Chr1 | 12293274 | 12293278 | 4 | |
Deletion | Chr9 | 12962816 | 12962819 | 3 | |
Deletion | Chr7 | 13541162 | 13541198 | 36 | |
Deletion | Chr1 | 14600001 | 14636000 | 35999 | 6 |
Deletion | Chr7 | 22364286 | 22364287 | 1 | |
Deletion | Chr3 | 22404761 | 22404766 | 5 | |
Deletion | Chr11 | 25665151 | 25665152 | 1 | |
Deletion | Chr4 | 25666411 | 25666433 | 22 | LOC_Os04g43390 |
Deletion | Chr5 | 25881046 | 25881047 | 1 | LOC_Os05g44470 |
Deletion | Chr6 | 26241410 | 26241415 | 5 | |
Deletion | Chr5 | 27222568 | 27222581 | 13 | |
Deletion | Chr1 | 27978918 | 27978920 | 2 | |
Deletion | Chr3 | 30801082 | 30801090 | 8 | |
Deletion | Chr2 | 31961453 | 31961454 | 1 | |
Deletion | Chr2 | 33905581 | 33905592 | 11 | LOC_Os02g55350 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 2694374 | 2694493 | 120 | |
Insertion | Chr5 | 22246987 | 22246989 | 3 | |
Insertion | Chr7 | 21872236 | 21872238 | 3 | LOC_Os07g36580![]() |
No Inversion
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 8367585 | Chr2 | 16568539 | 2 |
Translocation | Chr2 | 25438580 | Chr1 | 30548311 | LOC_Os02g42300 |
Translocation | Chr2 | 25438588 | Chr1 | 30544491 | LOC_Os02g42300 |