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Mutant Information

Mutant NameFN3650-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3650-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 31
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr114963186C-THET
SBSChr127290737A-THET
SBSChr1013826270A-GHET
SBSChr103898739C-THET
SBSChr113621919T-AHET
SBSChr1222007658C-THET
SBSChr227916382C-AHET
SBSChr229034587T-AHET
SBSChr316999892A-GHET
SBSChr319816560G-THomo
SBSChr335021399T-AHET
SBSChr36547041G-AHET
SBSChr428426728G-AHET
SBSChr518557626C-THomo
SBSChr527228857T-CHET
SBSChr529161728G-CHET
SBSChr53917580C-AHET
SBSChr617647371C-THomo
SBSChr618098369C-GHomo
SBSChr61835804G-CHET
SBSChr711300157G-THomo
SBSChr714217606C-THomo
SBSChr720174790A-THETNON_SYNONYMOUS_CODINGLOC_Os07g33740
SBSChr78370025T-CHomo
SBSChr81749639C-AHomo
SBSChr82249293C-GHET
SBSChr82352821A-GHomo
SBSChr83490996A-GHET
SBSChr83809120G-AHETNON_SYNONYMOUS_CODINGLOC_Os08g06820
SBSChr916035433G-CHET
SBSChr916533613G-THET

Deletions: 24
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr10303094330309474
DeletionChr45954006595401913
DeletionChr6606552160655287
DeletionChr11626993662699415
DeletionChr4657669965767012
DeletionChr109609919960994324
DeletionChr79800188980020719LOC_Os07g16710
DeletionChr1110024566100245682
DeletionChr111761637117616392LOC_Os01g21080
DeletionChr112293274122932784
DeletionChr912962816129628193
DeletionChr7135411621354119836
DeletionChr11460000114636000359996
DeletionChr722364286223642871
DeletionChr322404761224047665
DeletionChr1125665151256651521
DeletionChr4256664112566643322LOC_Os04g43390
DeletionChr525881046258810471LOC_Os05g44470
DeletionChr626241410262414155
DeletionChr5272225682722258113
DeletionChr127978918279789202
DeletionChr330801082308010908
DeletionChr231961453319614541
DeletionChr2339055813390559211LOC_Os02g55350

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1026943742694493120
InsertionChr522246987222469893
InsertionChr721872236218722383LOC_Os07g36580image

No Inversion

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr88367585Chr2165685392
TranslocationChr225438580Chr130548311LOC_Os02g42300
TranslocationChr225438588Chr130544491LOC_Os02g42300