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Mutant Information

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15012401	T-C	HET
SBS	Chr1	16412683	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29270
SBS	Chr1	25930480	T-A	HET
SBS	Chr1	338490	A-G	Homo
SBS	Chr1	35025934	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60590
SBS	Chr1	35239155	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60920
SBS	Chr1	37062040	C-T	HET
SBS	Chr1	41705787	C-A	HET
SBS	Chr1	41858040	T-A	HET
SBS	Chr10	12656007	G-A	HET
SBS	Chr10	5003382	C-A	HET
SBS	Chr11	10474882	C-A	HET
SBS	Chr11	9423338	A-T	HET
SBS	Chr12	19170667	C-T	HET
SBS	Chr12	4066622	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g08000
SBS	Chr12	9373698	G-A	HET
SBS	Chr2	16017955	G-A	HET
SBS	Chr2	31717231	A-T	HET
SBS	Chr2	35631097	C-T	HET
SBS	Chr2	4849583	C-T	HET
SBS	Chr3	11830220	T-G	HET
SBS	Chr3	16058877	A-G	HET
SBS	Chr3	16217767	C-T	Homo
SBS	Chr3	29119072	A-G	HET
SBS	Chr3	7378880	G-T	HET
SBS	Chr3	8978205	G-A	Homo
SBS	Chr4	8863079	T-C	HET
SBS	Chr4	9238640	G-A	HET
SBS	Chr5	27804957	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g48510
SBS	Chr6	23910889	C-T	HET
SBS	Chr6	26890220	C-G	HET
SBS	Chr6	8123707	C-G	HET
SBS	Chr7	19065969	A-G	HET
SBS	Chr7	24810559	T-A	Homo
SBS	Chr7	381070	A-C	Homo
SBS	Chr8	11096211	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18100
SBS	Chr8	11096232	A-T	HET
SBS	Chr8	19208850	A-G	Homo
SBS	Chr8	4365469	C-T	HET
SBS	Chr8	6359561	G-C	Homo
SBS	Chr8	6964878	G-C	HET
SBS	Chr9	13779324	A-G	HET
SBS	Chr9	16609127	C-A	Homo
SBS	Chr9	22670836	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g39420

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	61680	61707	27
Deletion	Chr8	3420001	3479000	58999	12
Deletion	Chr9	4337283	4337295	12
Deletion	Chr2	5293630	5293631	1
Deletion	Chr4	5671722	5671723	1
Deletion	Chr1	6723579	6723584	5
Deletion	Chr8	6794918	6794923	5	LOC_Os08g11590
Deletion	Chr3	7553402	7553404	2	LOC_Os03g13920
Deletion	Chr5	9131834	9131842	8
Deletion	Chr2	9139505	9139653	148
Deletion	Chr5	9845494	9845500	6
Deletion	Chr1	10470001	10498000	27999	5
Deletion	Chr1	10578001	10628000	49999	3
Deletion	Chr8	16576616	16576617	1
Deletion	Chr9	16630964	16630965	1
Deletion	Chr12	16658378	16658380	2
Deletion	Chr5	17095525	17095534	9
Deletion	Chr9	18588964	18588975	11
Deletion	Chr3	21458001	21475000	16999	4
Deletion	Chr5	22279666	22279667	1
Deletion	Chr3	24834596	24834599	3
Deletion	Chr2	34464001	34478000	13999	3
Deletion	Chr2	35393001	35418000	24999	3
Deletion	Chr1	39975278	39975284	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32988340	32988343	4
Insertion	Chr11	27121659	27121866	208
Insertion	Chr12	4130499	4130499	1	LOC_Os12g08100
Insertion	Chr5	3532026	3532028	3
Insertion	Chr6	13982283	13982283	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	27978715	28708331

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	126515	Chr7	14047221
Translocation	Chr8	1361488	Chr2	2418050
Translocation	Chr5	1851293	Chr4	1112574	LOC_Os04g02850
Translocation	Chr8	3074105	Chr1	24215764
Translocation	Chr8	3074196	Chr1	24316812	LOC_Os01g42730
Translocation	Chr3	5504283	Chr1	38091882	LOC_Os01g65610
Translocation	Chr10	5720401	Chr2	24465250	LOC_Os02g40400
Translocation	Chr4	8353881	Chr1	32282138
Translocation	Chr12	9228988	Chr4	7080256
Translocation	Chr11	22579375	Chr8	3761939	LOC_Os11g38070
Translocation	Chr11	24005113	Chr2	8611395	LOC_Os11g40249
Translocation	Chr11	26067191	Chr10	13432175	LOC_Os10g25920
Translocation	Chr11	27311378	Chr4	20036672

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