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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6056604	A-T	HET
SBS	Chr1	16594967	G-C	HET
SBS	Chr1	21633314	G-A	Homo
SBS	Chr2	13600144	G-C	Homo
SBS	Chr2	15477679	A-G	Homo
SBS	Chr2	18940204	G-A	HET
SBS	Chr3	3408400	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g06710
SBS	Chr3	16783047	G-C	Homo
SBS	Chr3	24454245	T-C	Homo
SBS	Chr4	21956394	C-T	HET
SBS	Chr4	22612219	C-A	HET
SBS	Chr4	22729646	C-T	HET	STOP_GAINED	LOC_Os04g38190
SBS	Chr4	27023965	C-T	HET
SBS	Chr5	19788477	C-A	HET
SBS	Chr5	20611457	C-T	HET
SBS	Chr6	12782574	A-G	HET
SBS	Chr8	6490431	T-C	HET
SBS	Chr8	12012735	T-C	HET
SBS	Chr8	25265670	C-A	HET
SBS	Chr8	25265672	T-C	HET
SBS	Chr8	28133806	G-A	HET
SBS	Chr9	1369550	T-A	HET
SBS	Chr9	20206068	T-C	HET
SBS	Chr9	21140245	C-T	HET
SBS	Chr10	8622148	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17170
SBS	Chr10	13122731	G-A	HET
SBS	Chr10	16286989	T-C	HET
SBS	Chr10	20737524	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g38930
SBS	Chr11	12937846	C-T	HET
SBS	Chr12	13900024	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24364
SBS	Chr12	20344229	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33700

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	6746026	6746027	1
Deletion	Chr7	9038288	9038294	6
Deletion	Chr2	15175400	15175411	11
Deletion	Chr10	19583735	19583736	1
Deletion	Chr12	20889858	20889864	6
Deletion	Chr1	21683882	21683896	14
Deletion	Chr4	25521780	25521783	3
Deletion	Chr4	31857632	31857636	4	LOC_Os04g53496

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	23000115	23000116	2
Insertion	Chr4	1955347	1955347	1	LOC_Os04g04200
Insertion	Chr6	29264180	29264181	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1506038	2042335	2
Inversion	Chr5	2042902	2250197	LOC_Os05g04430
Inversion	Chr10	7157116	7573952

Translocations: 16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	722618	Chr3	28717930
Translocation	Chr6	1753724	Chr5	18235054	LOC_Os05g31380
Translocation	Chr6	1753726	Chr5	18235345	LOC_Os05g31380
Translocation	Chr5	2042340	Chr4	22602009	LOC_Os05g04430
Translocation	Chr5	2042788	Chr4	22602011	LOC_Os05g04430
Translocation	Chr5	2250197	Chr4	22601568
Translocation	Chr7	6399845	Chr5	10232217
Translocation	Chr12	6979888	Chr3	2404530	2
Translocation	Chr9	7473292	Chr4	22602007	LOC_Os09g12970
Translocation	Chr9	7473297	Chr5	2250197	LOC_Os09g12970
Translocation	Chr8	8178750	Chr3	28268378
Translocation	Chr8	16385214	Chr7	15520150
Translocation	Chr11	16724474	Chr4	13537379
Translocation	Chr8	17769075	Chr2	13477750	2
Translocation	Chr5	18227544	Chr1	14975601
Translocation	Chr11	25821058	Chr5	18235053	LOC_Os05g31380

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