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Mutant Information

Mutant Name	FN367-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN367-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19259489	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34880
SBS	Chr1	25721608	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	33237701	G-C	HET	INTERGENIC
SBS	Chr2	2290331	C-A	HOMO	INTERGENIC
SBS	Chr2	30032908	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	2138366	T-A	HOMO	INTERGENIC
SBS	Chr3	2828585	G-T	HOMO	INTERGENIC
SBS	Chr3	3674918	T-G	HET	SYNONYMOUS_CODING
SBS	Chr3	23060728	T-G	HET	INTRON
SBS	Chr3	35967585	T-A	HET	SYNONYMOUS_CODING
SBS	Chr4	11785577	G-A	HET	INTRON
SBS	Chr4	13230937	G-A	HET	INTERGENIC
SBS	Chr4	21112415	G-A	HOMO	INTERGENIC
SBS	Chr5	11916315	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20320
SBS	Chr7	10631782	C-T	HET	INTERGENIC
SBS	Chr7	27243570	G-T	HET	INTERGENIC
SBS	Chr8	9102483	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g15060
SBS	Chr8	15810054	C-G	HOMO	INTRON
SBS	Chr8	17794040	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g29050
SBS	Chr8	18613190	A-T	HET	INTERGENIC
SBS	Chr11	1781141	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g04295
SBS	Chr11	12001411	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	13620711	A-G	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	608291	608295	4
Deletion	Chr12	2352694	2352709	15
Deletion	Chr8	3433650	3433683	33	LOC_Os08g06230
Deletion	Chr10	3946693	3946696	3
Deletion	Chr9	10068149	10068155	6	LOC_Os09g16449
Deletion	Chr3	11129156	11129176	20
Deletion	Chr4	14883402	14883403	1
Deletion	Chr5	16252117	16252119	2
Deletion	Chr2	16322304	16322313	9	LOC_Os02g27560
Deletion	Chr12	19750232	19750235	3
Deletion	Chr2	20377239	20377245	6
Deletion	Chr9	21286436	21286461	25
Deletion	Chr5	23673599	23932271	258672	51
Deletion	Chr5	23932252	24161187	228935	43
Deletion	Chr12	26878197	26878214	17	LOC_Os12g43300
Deletion	Chr4	29635736	29635737	1
Deletion	Chr1	29888550	29888588	38
Deletion	Chr2	30031450	30031469	19
Deletion	Chr4	34611519	34613489	1970	LOC_Os04g58120

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	2828603	2828603	1
Insertion	Chr4	8423163	8423164	2
Insertion	Chr3	25745703	25745705	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2833304	2984756	LOC_Os03g05680
Inversion	Chr1	21101679	21915346
Inversion	Chr5	23673625	24148557	LOC_Os05g40290
Inversion	Chr5	24148553	24161183
Inversion	Chr3	34658082	35289601

No Translocation

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