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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35197091	T-C	HET
SBS	Chr2	8224809	G-A	Homo
SBS	Chr2	21082102	A-G	HET
SBS	Chr3	7537959	G-A	HET
SBS	Chr3	16903637	G-C	Homo
SBS	Chr3	24210432	T-C	Homo
SBS	Chr3	26928145	C-T	Homo
SBS	Chr3	33651096	T-C	HET
SBS	Chr3	34295198	A-G	HET
SBS	Chr4	12372415	G-A	HET
SBS	Chr5	414944	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g01690
SBS	Chr5	15845504	C-T	HET
SBS	Chr5	17736053	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30610
SBS	Chr6	5496827	C-A	Homo
SBS	Chr6	11107823	T-C	HET
SBS	Chr6	13528212	A-G	HET
SBS	Chr6	25391518	C-A	HET
SBS	Chr6	26354404	G-A	Homo
SBS	Chr6	26568781	G-A	HET
SBS	Chr6	26733005	A-T	HET
SBS	Chr7	2256048	A-C	HET
SBS	Chr7	29023159	C-T	HET
SBS	Chr8	1351904	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03030
SBS	Chr8	3369910	T-G	HET
SBS	Chr8	6119525	A-G	HET
SBS	Chr8	18822109	C-T	HET
SBS	Chr8	20501964	C-T	HET
SBS	Chr8	26401549	A-G	HET
SBS	Chr9	3197569	C-T	HET
SBS	Chr9	12720336	G-A	HET
SBS	Chr9	21577067	A-G	HET
SBS	Chr10	4082823	G-A	HET
SBS	Chr10	10345256	G-A	HET
SBS	Chr10	12522726	C-T	HET	STOP_GAINED	LOC_Os10g24420
SBS	Chr10	13072854	G-A	HET
SBS	Chr11	16561518	G-C	Homo
SBS	Chr11	25058816	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41730
SBS	Chr12	4228624	G-C	HET
SBS	Chr12	20997560	C-T	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	188043	188046	3
Deletion	Chr1	1300830	1300837	7
Deletion	Chr1	3951643	3951645	2
Deletion	Chr1	4466197	4466199	2
Deletion	Chr1	6195001	6466000	270999	35
Deletion	Chr1	6480001	6865000	384999	58
Deletion	Chr1	6871001	6999000	127999	17
Deletion	Chr6	7189165	7189183	18
Deletion	Chr7	11308437	11308438	1
Deletion	Chr10	11626119	11626120	1
Deletion	Chr8	11631622	11631623	1
Deletion	Chr10	11633835	11633843	8	LOC_Os10g22460
Deletion	Chr4	14474520	14474521	1
Deletion	Chr8	15873733	15873734	1	LOC_Os08g26100
Deletion	Chr8	17510117	17510118	1
Deletion	Chr9	19428417	19428427	10	LOC_Os09g32540
Deletion	Chr9	22450266	22450274	8
Deletion	Chr4	25490943	25490944	1
Deletion	Chr5	27723612	27723621	9
Deletion	Chr4	27831752	27831780	28
Deletion	Chr3	28171880	28171881	1	LOC_Os03g49500
Deletion	Chr7	28366635	28366642	7	LOC_Os07g47440
Deletion	Chr5	29687352	29687353	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	17335820	17335821	2
Insertion	Chr4	19293177	19293179	3
Insertion	Chr4	29894349	29894354	6
Insertion	Chr5	29775827	29775827	1	LOC_Os05g51890
Insertion	Chr1	5943189	5943469	281
Insertion	Chr2	28185138	28185138	1
Insertion	Chr8	3232481	3232483	3
Insertion	Chr8	25127247	25127313	67

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6304221	6323277	2
Inversion	Chr3	6304238	6323285	2
Inversion	Chr11	27654129	27672413	2
Inversion	Chr11	27654158	27672463	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	15605207	Chr1	17720060
Translocation	Chr5	15605217	Chr1	17704526	LOC_Os01g32280
Translocation	Chr8	25229551	Chr2	27366667
Translocation	Chr8	25232016	Chr2	27366661

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