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| Mutant Information |
|---|
| Mutant Name | FN3687-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3687-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13995680 | C-T | HET | ||
| SBS | Chr1 | 34091323 | C-A | Homo | ||
| SBS | Chr1 | 40555719 | C-T | HET | ||
| SBS | Chr10 | 12386668 | C-T | HET | ||
| SBS | Chr10 | 15228552 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g29260 |
| SBS | Chr10 | 4746836 | C-G | Homo | ||
| SBS | Chr11 | 12797563 | C-T | HET | ||
| SBS | Chr11 | 15884647 | C-A | HET | ||
| SBS | Chr11 | 24800518 | A-G | Homo | ||
| SBS | Chr12 | 11342750 | C-A | Homo | ||
| SBS | Chr12 | 15286513 | A-G | Homo | ||
| SBS | Chr12 | 15679677 | C-A | HET | ||
| SBS | Chr12 | 15687570 | C-A | HET | ||
| SBS | Chr12 | 15746801 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g26860 |
| SBS | Chr12 | 23387439 | T-A | Homo | ||
| SBS | Chr2 | 13294302 | T-C | Homo | ||
| SBS | Chr2 | 30050360 | C-T | HET | ||
| SBS | Chr2 | 35867711 | C-T | Homo | STOP_GAINED | LOC_Os02g58710 |
| SBS | Chr3 | 26452487 | G-A | HET | ||
| SBS | Chr4 | 15955832 | A-G | HET | ||
| SBS | Chr4 | 23311864 | G-C | HET | ||
| SBS | Chr5 | 1512434 | A-C | HET | ||
| SBS | Chr6 | 15056285 | T-A | Homo | ||
| SBS | Chr6 | 2790279 | C-G | HET | ||
| SBS | Chr6 | 7855982 | C-T | HET | ||
| SBS | Chr8 | 22451583 | T-C | Homo | ||
| SBS | Chr9 | 20564720 | A-T | HET | ||
| SBS | Chr9 | 4866449 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g09100 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1030976 | 1030985 | 9 | LOC_Os04g02700 |
| Deletion | Chr2 | 4199057 | 4199058 | 1 | |
| Deletion | Chr6 | 4323537 | 4323548 | 11 | LOC_Os06g08670 |
| Deletion | Chr10 | 7370437 | 7370449 | 12 | |
| Deletion | Chr5 | 13340001 | 13364000 | 23999 | 4 |
| Deletion | Chr8 | 14304630 | 14304631 | 1 | LOC_Os08g23630 |
| Deletion | Chr12 | 14353947 | 14353953 | 6 | LOC_Os12g25000 |
| Deletion | Chr4 | 16166177 | 16166178 | 1 | |
| Deletion | Chr7 | 19511628 | 19511633 | 5 | |
| Deletion | Chr9 | 19908888 | 19908889 | 1 | |
| Deletion | Chr5 | 22485019 | 22485028 | 9 | |
| Deletion | Chr1 | 23751523 | 23751534 | 11 | |
| Deletion | Chr12 | 24696260 | 24696268 | 8 | |
| Deletion | Chr6 | 28779001 | 29086000 | 306999 | 54 |
| Deletion | Chr6 | 29614001 | 30006000 | 391999 | 64 |
| Deletion | Chr4 | 33429488 | 33429499 | 11 | |
| Deletion | Chr1 | 34071436 | 34071458 | 22 |
Insertions: 5
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1208020 | Chr5 | 12013396 | 2 |
| Translocation | Chr11 | 4963585 | Chr1 | 37745614 | LOC_Os01g65030 |
| Translocation | Chr12 | 11347786 | Chr4 | 15227357 | |
| Translocation | Chr11 | 14496676 | Chr4 | 3485367 | LOC_Os04g06610 |
| Translocation | Chr12 | 21494618 | Chr11 | 17511795 | LOC_Os12g35360 |
| Translocation | Chr6 | 28784055 | Chr5 | 6865901 | |
| Translocation | Chr6 | 30061768 | Chr5 | 6861944 | 2 |