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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19419189	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g35070
SBS	Chr1	19419193	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g35070
SBS	Chr1	22336815	C-A	HET
SBS	Chr1	6079553	G-T	HET
SBS	Chr11	13519591	C-T	HET
SBS	Chr11	20656877	A-G	HET
SBS	Chr11	4489029	C-T	HET
SBS	Chr12	25565446	G-A	HET
SBS	Chr2	13222368	A-G	HET
SBS	Chr3	12761134	C-T	HET
SBS	Chr3	15623646	A-G	HET
SBS	Chr3	17627872	A-G	Homo
SBS	Chr3	23341789	A-T	HET
SBS	Chr3	23341790	A-T	HET
SBS	Chr3	534669	A-T	HET
SBS	Chr4	28819474	A-G	HET
SBS	Chr4	7350202	C-T	HET
SBS	Chr5	24775027	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g42340
SBS	Chr5	28189520	A-C	HET
SBS	Chr5	8872570	C-A	HET
SBS	Chr5	9365337	A-T	HET
SBS	Chr6	1168333	C-T	Homo
SBS	Chr6	14513685	G-A	Homo
SBS	Chr6	700293	A-T	HET
SBS	Chr7	14835278	A-G	HET
SBS	Chr7	23476665	C-T	HET
SBS	Chr7	24247187	A-T	HET
SBS	Chr7	25686086	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g42900
SBS	Chr7	29448440	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g49170
SBS	Chr8	5566366	T-G	Homo
SBS	Chr9	13540198	T-A	HET

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	7277397	7277398	1
Deletion	Chr5	8744001	8797000	52999	7
Deletion	Chr5	8804001	9111000	306999	54
Deletion	Chr5	9122001	9177000	54999	7
Deletion	Chr8	16559936	16559943	7
Deletion	Chr4	19073637	19073877	240	LOC_Os04g31860
Deletion	Chr12	23944001	23978000	33999	5
Deletion	Chr8	24233001	24245000	11999	3
Deletion	Chr6	24807111	24807116	5
Deletion	Chr1	30102001	30122000	19999	3

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	4357002	4357003	2
Insertion	Chr2	28634162	28634165	4
Insertion	Chr2	360680	360680	1
Insertion	Chr6	13904097	13904149	53
Insertion	Chr6	16047129	16047481	353
Insertion	Chr6	29254786	29254787	2
Insertion	Chr7	22554021	22554021	1
Insertion	Chr7	26287892	26287893	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24610522	24661509
Inversion	Chr3	24610524	24661518
Inversion	Chr1	30101506	30217822	LOC_Os01g52560
Inversion	Chr1	30122582	30218233	LOC_Os01g52560

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	338454	Chr5	11351523	2
Translocation	Chr12	697421	Chr11	650908
Translocation	Chr9	4104941	Chr4	18885959	LOC_Os09g07980
Translocation	Chr7	11938603	Chr5	21335315	2
Translocation	Chr8	24232193	Chr4	31488200	LOC_Os04g52870
Translocation	Chr8	24232466	Chr4	31488198	LOC_Os04g52870
Translocation	Chr12	26149268	Chr4	16073648
Translocation	Chr8	27043224	Chr1	14983883	LOC_Os01g26400
Translocation	Chr4	27248177	Chr3	18277230

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