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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15704669	C-G	HET
SBS	Chr1	25251079	T-C	HET
SBS	Chr1	6397195	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g11830
SBS	Chr10	20968431	C-T	HET
SBS	Chr10	6741759	C-G	Homo
SBS	Chr10	7893125	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g15079
SBS	Chr12	15203630	T-C	HET
SBS	Chr2	11649624	A-T	HET
SBS	Chr2	12160774	G-T	HET
SBS	Chr2	19631945	C-T	HET
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	25964771	C-T	Homo
SBS	Chr2	28968663	G-A	Homo
SBS	Chr2	28968666	G-A	Homo
SBS	Chr2	4876536	A-C	HET
SBS	Chr2	5214038	C-T	HET
SBS	Chr2	5327161	A-T	HET
SBS	Chr3	33238220	T-A	Homo
SBS	Chr3	449871	G-C	HET
SBS	Chr4	2160802	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04510
SBS	Chr4	23200977	G-A	HET
SBS	Chr4	30921862	G-A	HET
SBS	Chr5	17772947	G-T	HET
SBS	Chr5	29886601	T-A	Homo
SBS	Chr6	14705240	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25130
SBS	Chr6	15538940	G-A	Homo
SBS	Chr6	17868246	G-A	HET
SBS	Chr6	20688989	C-T	HET
SBS	Chr6	20689212	A-G	HET
SBS	Chr7	13214470	A-T	HET
SBS	Chr7	19742495	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g33050
SBS	Chr8	17577783	C-T	Homo
SBS	Chr8	247390	G-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	11488869	11489376	507	LOC_Os01g20200
Deletion	Chr10	12947900	12947901	1
Deletion	Chr3	13529357	13529359	2	LOC_Os03g23840
Deletion	Chr4	15186363	15186370	7
Deletion	Chr10	15524602	15524611	9	LOC_Os10g29880
Deletion	Chr5	16750087	16750094	7	LOC_Os05g28610
Deletion	Chr10	17189481	17189482	1
Deletion	Chr9	17974347	17974354	7
Deletion	Chr7	18694457	18694461	4
Deletion	Chr11	22362183	22362185	2
Deletion	Chr12	22731411	22731414	3	LOC_Os12g37110
Deletion	Chr3	35204020	35204024	4
Deletion	Chr1	38394005	38394016	11

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21612212	21612214	3
Insertion	Chr7	2769658	2769659	2
Insertion	Chr8	23317908	23317911	4

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	317541	621078	2
Inversion	Chr10	5370044	5688627	LOC_Os10g10350
Inversion	Chr10	5370049	5688629	LOC_Os10g10350
Inversion	Chr7	6470370	7075521
Inversion	Chr7	6470392	7075530
Inversion	Chr1	16096120	16282929
Inversion	Chr1	16096122	16282933

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	230096	Chr1	42065609	LOC_Os01g72520
Translocation	Chr5	230128	Chr1	42065614	LOC_Os01g72520
Translocation	Chr6	9473710	Chr3	16475641	LOC_Os03g29020
Translocation	Chr5	19291806	Chr2	17063945
Translocation	Chr11	24621682	Chr8	9667766	LOC_Os08g15880

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