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| Mutant Information |
|---|
| Mutant Name | FN3738-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3738-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30235364 | G-C | Homo | ||
| SBS | Chr10 | 12303422 | C-T | HET | ||
| SBS | Chr10 | 17703327 | A-G | HET | ||
| SBS | Chr10 | 2544820 | C-A | HET | ||
| SBS | Chr12 | 22459668 | G-A | HET | ||
| SBS | Chr12 | 8769411 | G-A | Homo | ||
| SBS | Chr2 | 6166458 | C-T | Homo | ||
| SBS | Chr3 | 11182447 | A-G | Homo | ||
| SBS | Chr3 | 20399142 | A-T | HET | ||
| SBS | Chr3 | 5274250 | T-C | Homo | ||
| SBS | Chr4 | 24151392 | A-G | HET | ||
| SBS | Chr4 | 24395989 | C-T | HET | ||
| SBS | Chr5 | 18217872 | T-C | Homo | ||
| SBS | Chr5 | 18943990 | T-A | Homo | ||
| SBS | Chr7 | 18984209 | A-T | HET | ||
| SBS | Chr7 | 5895850 | G-T | Homo | ||
| SBS | Chr8 | 17231744 | T-A | HET | ||
| SBS | Chr8 | 17231745 | G-A | HET | ||
| SBS | Chr8 | 21647394 | C-T | HET | ||
| SBS | Chr8 | 2392683 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g04790 |
| SBS | Chr8 | 5874842 | C-T | HET | ||
| SBS | Chr9 | 12162175 | C-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 199611 | 199619 | 8 | LOC_Os05g01310 |
| Deletion | Chr3 | 757417 | 757419 | 2 | |
| Deletion | Chr12 | 901001 | 1061000 | 159999 | 27 |
| Deletion | Chr4 | 6535378 | 6535386 | 8 | LOC_Os04g11910 |
| Deletion | Chr5 | 20002787 | 20002788 | 1 | |
| Deletion | Chr3 | 22603849 | 22603851 | 2 | |
| Deletion | Chr5 | 23071399 | 23071412 | 13 | LOC_Os05g39330 |
| Deletion | Chr4 | 23943104 | 23943105 | 1 | |
| Deletion | Chr2 | 32039001 | 32058000 | 18999 | 4 |
| Deletion | Chr1 | 40271284 | 40271286 | 2 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 6481727 | 6481728 | 2 | |
| Insertion | Chr11 | 2544877 | 2544878 | 2 | |
| Insertion | Chr11 | 27830603 | 27830606 | 4 | |
| Insertion | Chr3 | 12935273 | 12935274 | 2 | |
| Insertion | Chr4 | 11739351 | 11740836 | 1486 | |
| Insertion | Chr5 | 15682444 | 15682446 | 3 | |
| Insertion | Chr7 | 13244706 | 13244706 | 1 | |
| Insertion | Chr7 | 20431189 | 20431189 | 1 | LOC_Os07g34150 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 3384111 | 3457594 | |
| Inversion | Chr3 | 3384125 | 3457607 | |
| Inversion | Chr6 | 28765655 | 29086526 | 2 |
| Inversion | Chr2 | 32039105 | 32919676 | LOC_Os02g52340 |
| Inversion | Chr2 | 32102510 | 32919687 | LOC_Os02g52470 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 903031 | Chr8 | 13116523 | |
| Translocation | Chr12 | 1058851 | Chr8 | 13116844 | |
| Translocation | Chr9 | 4039404 | Chr5 | 26216807 | LOC_Os05g45150 |
| Translocation | Chr9 | 4039609 | Chr5 | 26216808 | LOC_Os05g45150 |
| Translocation | Chr10 | 21389624 | Chr2 | 25852950 | |
| Translocation | Chr10 | 21390907 | Chr2 | 25852943 | LOC_Os10g39950 |
| Translocation | Chr8 | 27719955 | Chr5 | 17393325 | LOC_Os08g44030 |