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| Mutant Information |
|---|
| Mutant Name | FN3758-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3758-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32488012 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g56370 |
| SBS | Chr10 | 3469150 | C-T | Homo | ||
| SBS | Chr10 | 9368367 | A-G | Homo | ||
| SBS | Chr11 | 17500943 | T-C | HET | ||
| SBS | Chr11 | 23814776 | T-G | Homo | ||
| SBS | Chr11 | 24977834 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41620 |
| SBS | Chr11 | 873688 | C-T | HET | ||
| SBS | Chr12 | 11576825 | C-G | HET | ||
| SBS | Chr3 | 21952716 | C-G | HET | ||
| SBS | Chr3 | 8613755 | C-T | HET | ||
| SBS | Chr4 | 1787471 | C-T | HET | ||
| SBS | Chr4 | 18205487 | C-T | HET | ||
| SBS | Chr4 | 3560657 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06770 |
| SBS | Chr4 | 9756003 | G-A | HET | ||
| SBS | Chr5 | 2026318 | T-A | HET | ||
| SBS | Chr5 | 23630318 | G-A | HET | ||
| SBS | Chr6 | 13256873 | G-A | HET | ||
| SBS | Chr6 | 23801288 | T-G | HET | ||
| SBS | Chr7 | 10460797 | C-T | HET | STOP_GAINED | LOC_Os07g17710 |
| SBS | Chr7 | 10524318 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g17790 |
| SBS | Chr7 | 12817642 | G-A | Homo | ||
| SBS | Chr7 | 15948286 | C-T | Homo | ||
| SBS | Chr8 | 13244766 | C-T | HET | ||
| SBS | Chr8 | 2596687 | C-T | Homo | ||
| SBS | Chr9 | 22785139 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g39710 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 3413028 | 3413031 | 3 | |
| Deletion | Chr12 | 3533353 | 3533354 | 1 | LOC_Os12g07190 |
| Deletion | Chr2 | 4617672 | 4617676 | 4 | |
| Deletion | Chr12 | 9247561 | 9247563 | 2 | |
| Deletion | Chr3 | 11466679 | 11466688 | 9 | |
| Deletion | Chr11 | 12796001 | 12823000 | 26999 | 5 |
| Deletion | Chr11 | 12830001 | 13254000 | 423999 | 64 |
| Deletion | Chr9 | 13587946 | 13587947 | 1 | |
| Deletion | Chr8 | 16474622 | 16474623 | 1 | LOC_Os08g26970 |
| Deletion | Chr12 | 18332201 | 18332202 | 1 | |
| Deletion | Chr9 | 22434275 | 22434276 | 1 | |
| Deletion | Chr1 | 23655638 | 23655652 | 14 | |
| Deletion | Chr12 | 24527926 | 24527927 | 1 | LOC_Os12g39710 |
| Deletion | Chr8 | 25193353 | 25193354 | 1 | LOC_Os08g39800 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 10348131 | 10348141 | 11 | |
| Insertion | Chr3 | 24494539 | 24494540 | 2 | |
| Insertion | Chr4 | 8749036 | 8749036 | 1 | |
| Insertion | Chr9 | 4160493 | 4160518 | 26 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 13447192 | 13496490 | |
| Inversion | Chr4 | 24942526 | 25112929 | 2 |
| Inversion | Chr4 | 25112948 | 25280107 | LOC_Os04g42430 |
| Inversion | Chr6 | 26229075 | 26259600 | |
| Inversion | Chr6 | 26229861 | 26259605 | LOC_Os06g43610 |
| Inversion | Chr5 | 26858211 | 26862000 | |
| Inversion | Chr5 | 26859212 | 26862005 | LOC_Os05g46340 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1331061 | Chr7 | 28606608 | 2 |
| Translocation | Chr9 | 4757267 | Chr4 | 1178866 | |
| Translocation | Chr10 | 5375191 | Chr3 | 12796599 | LOC_Os03g22330 |
| Translocation | Chr10 | 5375747 | Chr3 | 12796598 | LOC_Os03g22330 |
| Translocation | Chr11 | 11508165 | Chr8 | 19974189 | 2 |
| Translocation | Chr6 | 23398482 | Chr3 | 22535157 | |
| Translocation | Chr7 | 28216500 | Chr4 | 17793219 | LOC_Os07g47201 |