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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10793145	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g19100
SBS	Chr1	15097950	C-T	HET
SBS	Chr1	19022734	C-T	HET
SBS	Chr1	20947275	C-T	HET
SBS	Chr1	21872308	T-C	HET
SBS	Chr1	22513808	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39930
SBS	Chr1	33277974	G-A	Homo
SBS	Chr2	4926913	C-T	HET
SBS	Chr2	10195616	C-T	HET
SBS	Chr2	12113308	C-A	HET
SBS	Chr2	14924873	C-A	HET
SBS	Chr3	1475489	A-C	Homo
SBS	Chr3	15822283	C-T	HET
SBS	Chr3	22575500	G-A	HET
SBS	Chr3	30048052	A-G	HET
SBS	Chr4	6763121	T-A	Homo
SBS	Chr5	17635280	C-G	HET
SBS	Chr6	20924596	G-A	HET
SBS	Chr7	22117876	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36940
SBS	Chr7	26103847	G-T	Homo
SBS	Chr8	15881606	G-C	HET
SBS	Chr8	23745044	G-C	HET
SBS	Chr9	20960620	G-A	Homo
SBS	Chr10	4934277	C-A	HET
SBS	Chr10	11334327	G-A	Homo
SBS	Chr11	257538	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g01439
SBS	Chr11	257539	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g01439

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	696342	696343	1
Deletion	Chr7	1050979	1050994	15
Deletion	Chr6	3429327	3429350	23
Deletion	Chr11	3495001	3627000	131999	18
Deletion	Chr11	3631001	3670000	38999	7
Deletion	Chr12	4529001	4595000	65999	8
Deletion	Chr12	4600001	4672000	71999	6
Deletion	Chr12	12316782	12316785	3	LOC_Os12g21870
Deletion	Chr6	14215155	14215156	1
Deletion	Chr10	17360244	17360245	1	LOC_Os10g33130
Deletion	Chr1	21554001	21631000	76999	12
Deletion	Chr11	22016444	22016449	5
Deletion	Chr11	22254099	22254106	7
Deletion	Chr3	23340757	23340759	2
Deletion	Chr11	23494001	23527000	32999	7
Deletion	Chr6	23659429	23659430	1
Deletion	Chr6	23937684	23937690	6
Deletion	Chr3	24568160	24568167	7
Deletion	Chr2	25540233	25540254	21
Deletion	Chr4	28209250	28209255	5	LOC_Os04g47560
Deletion	Chr1	38835720	38835721	1	LOC_Os01g66870

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	2301652	2301653	2
Insertion	Chr7	4028155	4028156	2
Insertion	Chr2	1506900	1506959	60
Insertion	Chr5	500547	500548	2
Insertion	Chr7	9604084	9604084	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4070966	4528931	LOC_Os12g08800
Inversion	Chr12	4070976	4678061
Inversion	Chr1	9682375	9784386
Inversion	Chr1	9682381	9784389

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4671227	Chr8	5769384	LOC_Os12g08950
Translocation	Chr12	4672447	Chr8	5772993
Translocation	Chr8	4900870	Chr2	31398300	LOC_Os02g51280
Translocation	Chr8	4902448	Chr2	31398306	LOC_Os02g51280
Translocation	Chr8	5769397	Chr5	22128415
Translocation	Chr8	5769714	Chr5	22128406
Translocation	Chr6	8875925	Chr2	18782950	LOC_Os02g31310
Translocation	Chr2	14658133	Chr1	17010103
Translocation	Chr12	14995788	Chr11	6168977	2

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