Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3765-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3765-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28599146 | C-A | Homo | ||
| SBS | Chr11 | 3261840 | A-G | HET | ||
| SBS | Chr12 | 14415532 | G-A | HET | ||
| SBS | Chr12 | 18858003 | A-C | HET | ||
| SBS | Chr12 | 22862848 | C-T | HET | ||
| SBS | Chr2 | 22717382 | C-T | HET | ||
| SBS | Chr3 | 20490052 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g36920 |
| SBS | Chr3 | 23009553 | C-T | HET | ||
| SBS | Chr3 | 29166335 | A-G | HET | ||
| SBS | Chr3 | 34880264 | A-G | HET | ||
| SBS | Chr3 | 3492584 | T-C | Homo | ||
| SBS | Chr3 | 4261325 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g08350 |
| SBS | Chr3 | 4261331 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g08350 |
| SBS | Chr3 | 4261332 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g08350 |
| SBS | Chr5 | 22971916 | A-C | HET | ||
| SBS | Chr6 | 15697597 | C-G | Homo | ||
| SBS | Chr6 | 2161711 | T-C | HET | ||
| SBS | Chr7 | 14263419 | G-A | Homo | ||
| SBS | Chr7 | 17677244 | A-T | Homo | ||
| SBS | Chr8 | 2632362 | C-T | Homo | ||
| SBS | Chr8 | 7299819 | C-A | HET | ||
| SBS | Chr8 | 8365951 | T-A | HET | ||
| SBS | Chr9 | 2992485 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g06360 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 2083206 | 2083208 | 2 | |
| Deletion | Chr9 | 8881667 | 8881669 | 2 | |
| Deletion | Chr12 | 9384155 | 9384156 | 1 | LOC_Os12g16390 |
| Deletion | Chr3 | 12738154 | 12738157 | 3 | |
| Deletion | Chr11 | 16369001 | 16490000 | 120999 | 17 |
| Deletion | Chr6 | 16615259 | 16615267 | 8 | |
| Deletion | Chr11 | 17077001 | 17149000 | 71999 | 14 |
| Deletion | Chr11 | 17787001 | 18027000 | 239999 | 35 |
| Deletion | Chr12 | 19377260 | 19377261 | 1 | |
| Deletion | Chr12 | 20843562 | 20843564 | 2 | |
| Deletion | Chr9 | 21837001 | 22087000 | 249999 | 39 |
| Deletion | Chr4 | 22859679 | 22859680 | 1 | |
| Deletion | Chr4 | 27520001 | 27548000 | 27999 | 5 |
| Deletion | Chr7 | 28715121 | 28715133 | 12 | |
| Deletion | Chr7 | 28926001 | 28934000 | 7999 | LOC_Os07g48410 |
| Deletion | Chr6 | 30404555 | 30404562 | 7 | |
| Deletion | Chr3 | 31621384 | 31621390 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 7736021 | 7736022 | 2 | LOC_Os12g13720 |
| Insertion | Chr12 | 7841243 | 7841246 | 4 | |
| Insertion | Chr4 | 20205107 | 20205156 | 50 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 16369217 | 16528230 | |
| Inversion | Chr7 | 28820330 | 28925342 | |
| Inversion | Chr7 | 28820356 | 28934503 | |
| Inversion | Chr4 | 30008760 | 30985072 | LOC_Os04g50720 |
| Inversion | Chr4 | 30008767 | 30985076 | LOC_Os04g50720 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 96314 | Chr3 | 22295898 | |
| Translocation | Chr7 | 3982394 | Chr3 | 2625292 | LOC_Os03g05360 |
| Translocation | Chr9 | 4757291 | Chr8 | 10071806 | |
| Translocation | Chr5 | 5212055 | Chr1 | 26217213 | 2 |
| Translocation | Chr8 | 15010874 | Chr1 | 35935197 | |
| Translocation | Chr12 | 16335281 | Chr8 | 18384123 | 2 |
| Translocation | Chr6 | 21542209 | Chr1 | 24321503 | LOC_Os06g36650 |
| Translocation | Chr7 | 28925354 | Chr6 | 3977639 | |
| Translocation | Chr7 | 28925446 | Chr6 | 3977471 | |
| Translocation | Chr7 | 29338024 | Chr1 | 24323245 |