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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31181564	T-A	HET
SBS	Chr1	31181567	T-A	HET
SBS	Chr1	32055488	T-C	Homo
SBS	Chr1	6314014	C-T	Homo
SBS	Chr10	2401396	T-C	Homo
SBS	Chr11	5543321	C-T	Homo
SBS	Chr11	9930921	C-G	Homo
SBS	Chr11	9930922	T-C	Homo
SBS	Chr12	12507904	C-G	HET
SBS	Chr12	13427800	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23660
SBS	Chr12	19782229	A-G	Homo
SBS	Chr12	23957594	A-C	Homo
SBS	Chr12	8022932	C-T	HET
SBS	Chr2	10199560	T-A	Homo
SBS	Chr2	10961459	A-T	HET
SBS	Chr2	2984327	C-T	HET
SBS	Chr3	11445318	C-T	HET
SBS	Chr3	1838424	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	26316262	G-A	Homo
SBS	Chr3	3834863	A-G	Homo
SBS	Chr3	9977079	G-A	HET
SBS	Chr4	15325223	C-A	Homo	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	22657712	C-T	HET
SBS	Chr5	14661550	T-A	Homo
SBS	Chr5	18217872	T-C	Homo
SBS	Chr5	20369899	T-A	Homo
SBS	Chr5	29699324	G-A	HET
SBS	Chr6	18115258	C-A	Homo
SBS	Chr6	20315040	G-C	HET
SBS	Chr6	5666767	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g10870
SBS	Chr7	18745419	G-T	Homo
SBS	Chr7	21937500	C-T	Homo
SBS	Chr8	22571843	T-G	HET
SBS	Chr8	23840026	C-T	HET
SBS	Chr8	24303934	T-C	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2579376	2579377	1
Deletion	Chr6	6473012	6473014	2	LOC_Os06g12080
Deletion	Chr10	6835678	6835679	1
Deletion	Chr6	8976419	8976445	26
Deletion	Chr11	11624341	11624346	5
Deletion	Chr11	11802034	11802037	3
Deletion	Chr9	12935203	12935211	8
Deletion	Chr6	14606073	14606090	17
Deletion	Chr1	16356131	16356158	27
Deletion	Chr1	20141456	20141457	1	LOC_Os01g36320
Deletion	Chr7	21708653	21708662	9	LOC_Os07g36300
Deletion	Chr9	21767187	21767188	1
Deletion	Chr3	22906677	22906682	5
Deletion	Chr12	23786944	23786956	12
Deletion	Chr5	25240579	25240582	3	LOC_Os05g43410
Deletion	Chr6	28434559	28434560	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	4536526	4536527	2
Insertion	Chr11	14925446	14925448	3
Insertion	Chr11	20878309	20878354	46
Insertion	Chr5	11172186	11172187	2	LOC_Os05g19240
Insertion	Chr6	20152409	20152417	9
Insertion	Chr8	23461108	23461210	103	LOC_Os08g37120
Insertion	Chr9	14311000	14311000	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2166186	2305313
Inversion	Chr9	3314996	3363764
Inversion	Chr9	3320615	3363768	LOC_Os09g06900
Inversion	Chr12	9262045	9526024
Inversion	Chr12	9262051	9526052

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3060612	Chr5	26623814
Translocation	Chr5	4954671	Chr4	857626
Translocation	Chr11	27423605	Chr2	8310768	LOC_Os02g14900

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