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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9208525	G-A	HET
SBS	Chr1	15793169	T-G	Homo
SBS	Chr1	26936372	T-A	HET
SBS	Chr1	34279445	C-T	HET
SBS	Chr1	34919998	G-C	HET
SBS	Chr1	42358924	C-T	Homo
SBS	Chr2	409614	T-C	Homo
SBS	Chr2	6579241	T-C	Homo
SBS	Chr2	15375464	C-T	Homo	STOP_GAINED	LOC_Os02g26190
SBS	Chr2	23151591	T-G	HET
SBS	Chr2	23358219	G-A	Homo
SBS	Chr3	13042212	A-G	HET
SBS	Chr3	28501288	G-A	Homo
SBS	Chr3	31639384	C-T	HET
SBS	Chr4	18296912	A-T	HET
SBS	Chr5	22982856	G-A	HET
SBS	Chr6	12562482	C-T	Homo
SBS	Chr7	3581474	C-G	HET
SBS	Chr7	10165201	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17240
SBS	Chr7	12111831	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g20940
SBS	Chr7	13883582	C-T	Homo
SBS	Chr7	16510564	A-G	HET
SBS	Chr7	23557396	G-A	HET
SBS	Chr8	2102919	C-T	HET
SBS	Chr8	6609231	A-T	Homo
SBS	Chr8	11394671	G-A	Homo
SBS	Chr8	17402555	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28500
SBS	Chr9	4107808	C-G	Homo
SBS	Chr9	17975894	C-T	HET
SBS	Chr10	272954	G-A	Homo
SBS	Chr11	6212250	C-T	HET
SBS	Chr11	6481645	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g11660
SBS	Chr11	27767378	G-C	HET
SBS	Chr12	4043401	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07960
SBS	Chr12	11782470	G-C	HET
SBS	Chr12	12485555	C-A	HET
SBS	Chr12	24004331	T-A	HET
SBS	Chr12	24004333	G-A	HET
SBS	Chr12	24004338	G-A	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1	261000	260999	41
Deletion	Chr1	857686	857689	3
Deletion	Chr3	1479824	1479825	1
Deletion	Chr4	2920628	2920633	5	LOC_Os04g05710
Deletion	Chr6	6298001	6313000	14999	3
Deletion	Chr6	10023872	10023878	6
Deletion	Chr8	10468199	10468200	1
Deletion	Chr8	10468902	10468903	1
Deletion	Chr7	11080001	11257000	176999	23
Deletion	Chr11	11540734	11540739	5	LOC_Os11g20040
Deletion	Chr7	11598770	11598772	2
Deletion	Chr4	12690681	12690682	1	LOC_Os04g22400
Deletion	Chr10	14173913	14173916	3
Deletion	Chr7	14816944	14816961	17
Deletion	Chr6	15741894	15741895	1	LOC_Os06g27800
Deletion	Chr6	15925980	15925998	18
Deletion	Chr4	15949001	16016000	66999	10
Deletion	Chr4	16025001	16080000	54999	8
Deletion	Chr9	18072323	18072339	16	LOC_Os09g29720
Deletion	Chr9	22660905	22660917	12	LOC_Os09g39410
Deletion	Chr5	22996832	22996837	5
Deletion	Chr1	27258581	27258585	4
Deletion	Chr8	27625588	27625590	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	35453906	35453907	2
Insertion	Chr3	22759606	22759724	119
Insertion	Chr10	7168523	7168523	1
Insertion	Chr12	23979751	23979751	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	15951523	16230468	LOC_Os04g27440
Inversion	Chr4	16198520	16230469	LOC_Os04g27440
Inversion	Chr11	19390247	19639914
Inversion	Chr11	20190661	20242002
Inversion	Chr11	20190670	20242008

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5528651	Chr2	10035630	LOC_Os02g17440
Translocation	Chr11	5528656	Chr1	915544
Translocation	Chr2	10035625	Chr1	915778	2
Translocation	Chr11	18279665	Chr3	29622495
Translocation	Chr6	24355944	Chr1	31032902
Translocation	Chr11	26547084	Chr6	6311132	LOC_Os11g43950
Translocation	Chr11	26646784	Chr6	6297224	LOC_Os06g11850

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