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| Mutant Information |
|---|
| Mutant Name | FN3808-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3808-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9055383 | G-A | HET | ||
| SBS | Chr10 | 7787221 | G-T | HET | ||
| SBS | Chr11 | 19642388 | G-A | Homo | ||
| SBS | Chr12 | 20336404 | A-T | HET | ||
| SBS | Chr2 | 12668838 | A-G | Homo | ||
| SBS | Chr2 | 31545512 | C-T | HET | ||
| SBS | Chr2 | 5983996 | T-G | HET | ||
| SBS | Chr3 | 15174038 | C-T | Homo | ||
| SBS | Chr3 | 26324003 | C-T | HET | ||
| SBS | Chr3 | 36263983 | T-G | HET | ||
| SBS | Chr3 | 6081073 | A-T | Homo | ||
| SBS | Chr4 | 13530947 | G-T | Homo | ||
| SBS | Chr4 | 13530948 | C-T | Homo | ||
| SBS | Chr5 | 6971488 | G-T | HET | ||
| SBS | Chr5 | 6971489 | A-T | HET | ||
| SBS | Chr5 | 7976879 | G-C | HET | ||
| SBS | Chr6 | 4482691 | T-A | HET | ||
| SBS | Chr7 | 19702595 | G-A | HET | ||
| SBS | Chr7 | 20453919 | T-A | HET | ||
| SBS | Chr7 | 27736627 | G-T | HET | ||
| SBS | Chr8 | 27222376 | A-G | HET | ||
| SBS | Chr8 | 3240479 | G-C | HET | ||
| SBS | Chr8 | 4757565 | T-C | Homo | ||
| SBS | Chr9 | 5576128 | T-C | HET | ||
| SBS | Chr9 | 5594893 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g10270 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3148377 | 3148379 | 2 | |
| Deletion | Chr2 | 3787001 | 3904000 | 116999 | 21 |
| Deletion | Chr12 | 4799260 | 4799261 | 1 | |
| Deletion | Chr11 | 12657038 | 12657039 | 1 | LOC_Os11g22010 |
| Deletion | Chr2 | 12699432 | 12699435 | 3 | |
| Deletion | Chr12 | 12737963 | 12737964 | 1 | LOC_Os12g22570 |
| Deletion | Chr10 | 14054725 | 14054732 | 7 | |
| Deletion | Chr2 | 15977183 | 15977192 | 9 | |
| Deletion | Chr3 | 21295507 | 21295510 | 3 | |
| Deletion | Chr3 | 21981163 | 21981169 | 6 | LOC_Os03g39590 |
| Deletion | Chr9 | 22157231 | 22157232 | 1 | LOC_Os09g38510 |
| Deletion | Chr3 | 36080001 | 36091000 | 10999 | LOC_Os03g63870 |
| Deletion | Chr1 | 41043631 | 41043638 | 7 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 11575371 | 11575371 | 1 | |
| Insertion | Chr12 | 17096932 | 17096932 | 1 | LOC_Os12g28920 |
| Insertion | Chr3 | 21807182 | 21807182 | 1 | LOC_Os03g39250 |
| Insertion | Chr6 | 14551720 | 14551720 | 1 | |
| Insertion | Chr8 | 18431140 | 18431140 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 10249307 | 10276093 | LOC_Os08g16760 |
| Inversion | Chr8 | 10252879 | 10276099 | LOC_Os08g16770 |
| Inversion | Chr1 | 16852151 | 16896536 | |
| Inversion | Chr8 | 23845928 | 24058598 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 9977855 | Chr2 | 19708342 | LOC_Os07g16960 |
| Translocation | Chr9 | 11377152 | Chr2 | 18782 | |
| Translocation | Chr9 | 11384460 | Chr5 | 16073216 | |
| Translocation | Chr9 | 11384461 | Chr2 | 18758 | |
| Translocation | Chr12 | 11388009 | Chr7 | 1638446 | LOC_Os07g03910 |
| Translocation | Chr5 | 15283554 | Chr4 | 10040435 | LOC_Os05g26270 |
| Translocation | Chr10 | 20847724 | Chr2 | 9399095 | |
| Translocation | Chr12 | 22022170 | Chr4 | 15489637 | |
| Translocation | Chr7 | 23070870 | Chr3 | 9825037 | 2 |
| Translocation | Chr7 | 23070910 | Chr3 | 9823017 | 2 |
| Translocation | Chr8 | 24068088 | Chr1 | 7233748 |