Search Results
| Mutant Information |
|---|
| Mutant Name | FN3809-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3809-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12966329 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g23040 |
| SBS | Chr1 | 14229159 | G-A | HET | ||
| SBS | Chr2 | 1941378 | G-T | HET | ||
| SBS | Chr3 | 21543633 | C-A | HET | ||
| SBS | Chr3 | 28272979 | C-T | Homo | ||
| SBS | Chr3 | 32006319 | C-T | Homo | ||
| SBS | Chr3 | 36199618 | C-T | Homo | ||
| SBS | Chr4 | 2525324 | C-A | HET | ||
| SBS | Chr4 | 2525325 | C-T | HET | ||
| SBS | Chr4 | 4344973 | G-C | HET | ||
| SBS | Chr4 | 5172299 | G-T | HET | ||
| SBS | Chr4 | 9335188 | C-T | HET | ||
| SBS | Chr4 | 10738369 | A-G | HET | ||
| SBS | Chr4 | 25689588 | T-C | HET | ||
| SBS | Chr5 | 3772038 | C-T | HET | ||
| SBS | Chr5 | 8369389 | G-A | HET | ||
| SBS | Chr5 | 11451935 | C-T | HET | ||
| SBS | Chr5 | 14330675 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g24720 |
| SBS | Chr5 | 17963397 | T-C | HET | ||
| SBS | Chr5 | 21403205 | A-G | HET | ||
| SBS | Chr5 | 26667833 | A-G | HET | ||
| SBS | Chr6 | 6501281 | T-C | Homo | ||
| SBS | Chr6 | 12865575 | C-T | Homo | ||
| SBS | Chr6 | 13093928 | C-T | HET | ||
| SBS | Chr7 | 6606875 | T-C | HET | ||
| SBS | Chr7 | 12107636 | G-A | Homo | ||
| SBS | Chr8 | 9226781 | T-A | Homo | ||
| SBS | Chr9 | 3643453 | A-G | Homo | ||
| SBS | Chr9 | 6983744 | G-A | HET | ||
| SBS | Chr9 | 14383516 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g24220 |
| SBS | Chr10 | 11803046 | T-C | HET | ||
| SBS | Chr11 | 2097945 | A-T | Homo | ||
| SBS | Chr11 | 25217561 | G-A | HET | ||
| SBS | Chr12 | 19685250 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g32630 |
| SBS | Chr12 | 25235170 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g40760 |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 644001 | 663000 | 18999 | LOC_Os09g01960 |
| Deletion | Chr10 | 6936001 | 7059000 | 122999 | 16 |
| Deletion | Chr6 | 7840171 | 7840179 | 8 | |
| Deletion | Chr10 | 7971001 | 7982000 | 10999 | LOC_Os10g15340 |
| Deletion | Chr10 | 7993001 | 8028000 | 34999 | 7 |
| Deletion | Chr10 | 8067001 | 8088000 | 20999 | 3 |
| Deletion | Chr2 | 13341930 | 13341931 | 1 | |
| Deletion | Chr6 | 14110702 | 14110729 | 27 | |
| Deletion | Chr11 | 14592669 | 14592670 | 1 | |
| Deletion | Chr9 | 18079311 | 18079334 | 23 | LOC_Os09g29730 |
| Deletion | Chr8 | 19190732 | 19190733 | 1 | |
| Deletion | Chr5 | 25579463 | 25579466 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 12235559 | 12235562 | 4 | |
| Insertion | Chr11 | 16230816 | 16230816 | 1 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3954794 | Chr3 | 1385052 | LOC_Os03g03240 |
| Translocation | Chr5 | 5504610 | Chr2 | 13956834 | 2 |
| Translocation | Chr10 | 7685655 | Chr6 | 5168933 | 2 |
| Translocation | Chr12 | 11544833 | Chr2 | 16788106 | LOC_Os02g28400 |
| Translocation | Chr4 | 12370203 | Chr2 | 1489446 | |
| Translocation | Chr4 | 13036348 | Chr3 | 25422753 | 2 |
| Translocation | Chr11 | 17799441 | Chr10 | 12210640 |