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| Mutant Information |
|---|
| Mutant Name | FN3833-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3833-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12839866 | G-A | HET | ||
| SBS | Chr1 | 14767928 | G-A | HET | ||
| SBS | Chr1 | 34176554 | T-A | HET | ||
| SBS | Chr10 | 1077647 | G-A | Homo | ||
| SBS | Chr10 | 1913225 | A-T | HET | ||
| SBS | Chr10 | 22428508 | T-C | HET | ||
| SBS | Chr11 | 13767469 | C-T | HET | ||
| SBS | Chr11 | 24756776 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41300 |
| SBS | Chr11 | 9918001 | C-T | HET | ||
| SBS | Chr12 | 11556599 | T-C | Homo | ||
| SBS | Chr12 | 12965107 | C-T | HET | ||
| SBS | Chr12 | 16195933 | G-T | Homo | ||
| SBS | Chr2 | 13291313 | A-T | HET | ||
| SBS | Chr2 | 15385425 | T-C | HET | ||
| SBS | Chr2 | 5770337 | T-A | Homo | ||
| SBS | Chr3 | 14098540 | A-T | HET | ||
| SBS | Chr3 | 14629446 | C-T | HET | ||
| SBS | Chr3 | 18252043 | C-A | Homo | ||
| SBS | Chr3 | 23209851 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g41790 |
| SBS | Chr3 | 31891039 | A-T | HET | ||
| SBS | Chr4 | 30403704 | C-T | HET | ||
| SBS | Chr5 | 15065997 | C-T | Homo | ||
| SBS | Chr5 | 1724749 | T-C | HET | ||
| SBS | Chr5 | 21334299 | A-T | HET | ||
| SBS | Chr5 | 3138424 | T-C | HET | ||
| SBS | Chr5 | 8120929 | T-C | Homo | ||
| SBS | Chr6 | 12906799 | A-C | HET | ||
| SBS | Chr8 | 19932720 | G-A | HET | ||
| SBS | Chr8 | 20578678 | C-T | HET | ||
| SBS | Chr8 | 7134034 | G-A | Homo |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 3910505 | 3910506 | 1 | LOC_Os08g07000 |
| Deletion | Chr5 | 4306677 | 4306678 | 1 | |
| Deletion | Chr9 | 5722207 | 5722222 | 15 | LOC_Os09g10470 |
| Deletion | Chr2 | 6179001 | 6192000 | 12999 | 2 |
| Deletion | Chr5 | 6790365 | 6790368 | 3 | |
| Deletion | Chr1 | 10040117 | 10040125 | 8 | LOC_Os01g17460 |
| Deletion | Chr2 | 10074660 | 10074661 | 1 | |
| Deletion | Chr7 | 13716001 | 13792000 | 75999 | 10 |
| Deletion | Chr7 | 13817001 | 14222000 | 404999 | 62 |
| Deletion | Chr3 | 13861003 | 13861009 | 6 | |
| Deletion | Chr7 | 14251001 | 14325000 | 73999 | 7 |
| Deletion | Chr3 | 15515608 | 15515616 | 8 | |
| Deletion | Chr12 | 16839384 | 16839387 | 3 | |
| Deletion | Chr3 | 18764385 | 18764388 | 3 | |
| Deletion | Chr5 | 21286688 | 21286690 | 2 | |
| Deletion | Chr4 | 25973003 | 25973008 | 5 | |
| Deletion | Chr4 | 28656633 | 28656636 | 3 | |
| Deletion | Chr2 | 33091637 | 33091649 | 12 | LOC_Os02g54020 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 83230 | 83233 | 4 | |
| Insertion | Chr9 | 17055483 | 17055483 | 1 | |
| Insertion | Chr9 | 2067788 | 2067789 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 3987314 | 4314597 | LOC_Os03g07840 |
| Inversion | Chr3 | 3987323 | 4314601 | LOC_Os03g07840 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 10279673 | Chr1 | 2398728 | |
| Translocation | Chr11 | 16997641 | Chr2 | 474658 | |
| Translocation | Chr11 | 19879100 | Chr3 | 1946822 | LOC_Os03g04230 |
| Translocation | Chr8 | 20853780 | Chr1 | 17838366 | |
| Translocation | Chr12 | 23132351 | Chr2 | 691366 | LOC_Os02g02210 |
| Translocation | Chr4 | 29209418 | Chr2 | 24568877 |