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Mutant Information

Mutant NameFN3838-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3838-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 53
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr124072577G-AHETNON_SYNONYMOUS_CODINGLOC_Os01g42370
SBSChr139730126C-AHET
SBSChr140893093C-THET
SBSChr101658670C-AHETNON_SYNONYMOUS_CODINGLOC_Os10g03690
SBSChr106183298C-GHETNON_SYNONYMOUS_CODINGLOC_Os10g11160
SBSChr1115175928G-AHET
SBSChr1124057797C-GHomo
SBSChr113197898G-THET
SBSChr12344706G-CHET
SBSChr124621959T-CHomo
SBSChr212678767T-AHET
SBSChr212678777T-CHET
SBSChr217259792C-AHomo
SBSChr234186144G-AHET
SBSChr24798057A-GHET
SBSChr28208532C-AHET
SBSChr310131412C-GHET
SBSChr311706481C-AHETNON_SYNONYMOUS_CODINGLOC_Os03g20690
SBSChr319100921A-GHETNON_SYNONYMOUS_CODINGLOC_Os03g33420
SBSChr320164922T-AHET
SBSChr32572393C-AHET
SBSChr421920965T-GHETNON_SYNONYMOUS_CODINGLOC_Os04g35950
SBSChr425481163G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g43050
SBSChr432825756G-AHET
SBSChr512665933T-AHET
SBSChr514006472T-AHET
SBSChr515237124C-THETNON_SYNONYMOUS_CODINGLOC_Os05g26180
SBSChr518916693C-AHET
SBSChr524869796T-GHET
SBSChr529659755T-CHET
SBSChr55074213G-THETNON_SYNONYMOUS_CODINGLOC_Os05g09110
SBSChr631222648C-THomo
SBSChr66332191G-CHET
SBSChr68763746A-GHET
SBSChr71437986G-CHomo
SBSChr714645129A-GHomoNON_SYNONYMOUS_CODINGLOC_Os07g25550
SBSChr719050411C-AHET
SBSChr722725969G-AHomo
SBSChr75963369T-CHETNON_SYNONYMOUS_CODINGLOC_Os07g10900
SBSChr79801555C-THET
SBSChr814024680G-AHET
SBSChr814368835T-AHET
SBSChr823233978G-AHomo
SBSChr827330659G-CHET
SBSChr84162163C-AHETNON_SYNONYMOUS_CODINGLOC_Os08g07410
SBSChr85763547C-AHET
SBSChr913492133C-AHET
SBSChr916194153T-AHET
SBSChr91862146G-AHomoNON_SYNONYMOUS_CODINGLOC_Os09g03690
SBSChr919929999G-CHET
SBSChr94645796C-THomo
SBSChr94645797C-GHomo
SBSChr95682052T-CHET

Deletions: 21
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr52485022485075LOC_Os05g01430
DeletionChr122071001249500042399962
DeletionChr12249700125870008999917
DeletionChr12348369334836941
DeletionChr4394282539428316
DeletionChr11397604239760431
DeletionChr7724162472416262
DeletionChr611613757116137592
DeletionChr3123110011248700017599932
DeletionChr314943061149430665
DeletionChr116780372167803731
DeletionChr11694545216946101649
DeletionChr718914708189147102
DeletionChr821922302219223053
DeletionChr623194508231945091
DeletionChr823681849236818578
DeletionChr126560084265600917LOC_Os01g46640
DeletionChr127197998271980035
DeletionChr327639324276393317
DeletionChr629710279297102801
DeletionChr131761061317610676

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr21490854214908723182
InsertionChr422948783229487853
InsertionChr93313623313676

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr261851736221496LOC_Os02g11930
InversionChr261851786221530LOC_Os02g11930
InversionChr62248310822521710
InversionChr82730124727301429

Translocations: 2
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr122147144Chr115073923
TranslocationChr618190425Chr38985228