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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9949853	G-A	HET
SBS	Chr1	25248045	G-C	Homo
SBS	Chr1	33901762	T-A	Homo
SBS	Chr1	41509428	G-A	HET
SBS	Chr1	41821743	G-T	Homo
SBS	Chr3	5166990	G-T	HET
SBS	Chr3	11015129	A-G	HET
SBS	Chr3	16174817	G-A	HET
SBS	Chr3	35508446	A-G	Homo
SBS	Chr4	18160707	C-T	HET
SBS	Chr5	1533696	A-T	HET
SBS	Chr5	17889296	A-G	Homo
SBS	Chr5	27542771	A-C	Homo
SBS	Chr6	19896233	C-T	HET
SBS	Chr7	19346095	T-C	HET
SBS	Chr8	5903759	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10180
SBS	Chr8	11114630	G-A	HET
SBS	Chr8	11114631	C-A	HET
SBS	Chr8	13574926	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22540
SBS	Chr9	18675201	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g31060
SBS	Chr10	2010018	C-T	HET
SBS	Chr10	10126824	C-T	HET
SBS	Chr10	11556110	C-T	HET
SBS	Chr10	15820189	C-T	HET
SBS	Chr10	16093888	C-T	HET
SBS	Chr11	22257543	A-T	HET
SBS	Chr12	1216371	C-A	Homo
SBS	Chr12	11015377	C-T	Homo
SBS	Chr12	20565960	C-T	Homo
SBS	Chr12	26046676	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42010

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1618700	1618703	3
Deletion	Chr9	2082612	2082613	1
Deletion	Chr3	3797314	3797316	2
Deletion	Chr8	6505363	6505366	3
Deletion	Chr2	6842392	6842394	2
Deletion	Chr12	8050001	8241000	190999	26
Deletion	Chr8	8154664	8154671	7
Deletion	Chr10	11998407	11998408	1
Deletion	Chr5	12374099	12374106	7	LOC_Os05g21040
Deletion	Chr3	17405001	17495000	89999	18
Deletion	Chr1	17513038	17513043	5
Deletion	Chr8	21759933	21759958	25	LOC_Os08g34640
Deletion	Chr4	25535347	25535351	4
Deletion	Chr4	33934334	33934342	8

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7588758	7588761	4
Insertion	Chr2	1587011	1587012	2
Insertion	Chr4	19353424	19353424	1
Insertion	Chr8	125683	125685	3
Insertion	Chr11	15465484	15465485	2
Insertion	Chr5	15388851	15388852	2
Insertion	Chr5	21998763	21998763	1
Insertion	Chr6	17523889	17523892	4	LOC_Os06g30340

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12934321	12934662	LOC_Os06g22290
Inversion	Chr8	20570090	20825076
Inversion	Chr8	20570098	20825080

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	164478	Chr5	14966498
Translocation	Chr12	1482577	Chr2	9635657	LOC_Os12g03680
Translocation	Chr9	1683656	Chr3	25422296	2
Translocation	Chr9	3212447	Chr6	18136411	LOC_Os06g31200
Translocation	Chr10	5265487	Chr6	11799779
Translocation	Chr10	5720401	Chr2	24465250	LOC_Os02g40400
Translocation	Chr10	8060450	Chr5	16540437	2
Translocation	Chr12	8261364	Chr1	10113261
Translocation	Chr12	8261399	Chr1	10113728	LOC_Os01g18060
Translocation	Chr3	14688288	Chr1	3006849
Translocation	Chr3	17407830	Chr1	10142144	LOC_Os03g30510
Translocation	Chr3	17489202	Chr1	10137651	2
Translocation	Chr11	22656712	Chr1	10834620
Translocation	Chr12	24607011	Chr5	2957584

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