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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12027580	G-A	HET
SBS	Chr1	13399696	C-A	HET
SBS	Chr1	31742972	C-A	HET
SBS	Chr1	662794	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g02210
SBS	Chr10	19547110	T-C	HET
SBS	Chr11	16456444	A-T	HET
SBS	Chr12	19516566	G-A	HET
SBS	Chr12	21277143	A-T	HET	STOP_GAINED	LOC_Os12g34950
SBS	Chr12	23254108	T-C	HET
SBS	Chr12	23928905	T-A	HET
SBS	Chr2	20806935	A-G	HET
SBS	Chr2	23022021	T-C	Homo
SBS	Chr2	25993375	G-A	HET
SBS	Chr2	26425386	C-T	HET
SBS	Chr2	30945038	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50660
SBS	Chr2	31282029	G-A	HET
SBS	Chr2	31282030	C-T	HET
SBS	Chr2	35867711	C-T	Homo	STOP_GAINED	LOC_Os02g58710
SBS	Chr2	7527627	C-T	HET
SBS	Chr3	17841557	C-T	Homo
SBS	Chr3	25044447	G-A	Homo
SBS	Chr3	35202256	C-T	Homo
SBS	Chr3	36113949	T-A	HET
SBS	Chr4	23586670	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39570
SBS	Chr4	25489281	T-A	HET
SBS	Chr4	31909143	G-A	HET
SBS	Chr5	16415512	C-T	HET
SBS	Chr5	27019048	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46680
SBS	Chr5	4900078	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g08870
SBS	Chr5	812982	T-C	HET
SBS	Chr6	1141680	G-A	Homo
SBS	Chr6	16613981	A-G	HET
SBS	Chr6	2768036	T-G	Homo
SBS	Chr7	15143401	A-T	HET
SBS	Chr7	7392101	G-A	Homo	STOP_GAINED	LOC_Os07g12880
SBS	Chr8	1121195	C-T	HET
SBS	Chr9	20564720	A-T	Homo
SBS	Chr9	287140	G-A	HET
SBS	Chr9	399320	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01560

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	774014	774031	17
Deletion	Chr5	840507	840513	6
Deletion	Chr11	1309001	1352000	42999	6
Deletion	Chr8	3639683	3639686	3
Deletion	Chr7	4061308	4061311	3
Deletion	Chr7	7060113	7060116	3
Deletion	Chr11	7852865	7852873	8
Deletion	Chr4	13541927	13541929	2
Deletion	Chr3	16299822	16299826	4
Deletion	Chr8	18726072	18726090	18
Deletion	Chr1	22567184	22567195	11	LOC_Os01g40010
Deletion	Chr11	26879029	26879032	3	LOC_Os11g44430
Deletion	Chr4	31920664	31920669	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	25634717	25634799	83	LOC_Os11g42590
Insertion	Chr11	9981486	9981489	4
Insertion	Chr12	22687920	22687920	1	LOC_Os12g37010
Insertion	Chr2	379397	379397	1
Insertion	Chr6	28607046	28607447	402
Insertion	Chr8	15286949	15286976	28

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3409926	3939338	2
Inversion	Chr3	3409947	3939395	2
Inversion	Chr5	4292654	4904369	2
Inversion	Chr5	4292666	4904374	2
Inversion	Chr3	27662649	28086899	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	722422	Chr1	19462834
Translocation	Chr12	1993026	Chr11	2062704	2
Translocation	Chr9	10370589	Chr4	14572701
Translocation	Chr8	10668730	Chr6	18881069	LOC_Os06g32470
Translocation	Chr11	16590731	Chr6	27543274	2
Translocation	Chr10	18179087	Chr6	20502511	LOC_Os06g35170
Translocation	Chr4	26984603	Chr2	10380324	LOC_Os02g17920
Translocation	Chr4	26984606	Chr2	10379388	LOC_Os02g17920
Translocation	Chr11	28651834	Chr1	18700066

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