Search Results
| Mutant Information |
|---|
| Mutant Name | FN3860-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3860-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6098068 | C-T | HET | ||
| SBS | Chr1 | 25426256 | A-G | HET | ||
| SBS | Chr1 | 30669104 | C-T | HET | ||
| SBS | Chr2 | 2790604 | G-A | HET | ||
| SBS | Chr2 | 3959736 | T-A | Homo | ||
| SBS | Chr2 | 6193169 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g11940 |
| SBS | Chr2 | 16851781 | T-C | Homo | ||
| SBS | Chr3 | 14143433 | G-A | HET | ||
| SBS | Chr3 | 16321309 | G-A | HET | ||
| SBS | Chr3 | 21718601 | C-T | HET | ||
| SBS | Chr4 | 1504977 | T-C | HET | ||
| SBS | Chr4 | 5020013 | C-T | HET | ||
| SBS | Chr5 | 4791748 | G-C | HET | ||
| SBS | Chr5 | 7001557 | A-T | HET | ||
| SBS | Chr5 | 11788524 | C-A | Homo | ||
| SBS | Chr5 | 11788525 | C-A | Homo | ||
| SBS | Chr5 | 20094782 | A-C | HET | ||
| SBS | Chr6 | 642603 | A-T | HET | ||
| SBS | Chr8 | 5427546 | T-C | HET | ||
| SBS | Chr8 | 5820615 | G-T | HET | ||
| SBS | Chr8 | 7655442 | C-T | HET | ||
| SBS | Chr9 | 4264191 | C-T | HET | ||
| SBS | Chr9 | 4285455 | T-C | HET | ||
| SBS | Chr10 | 13514 | G-T | HET | ||
| SBS | Chr10 | 11753752 | A-T | HET | ||
| SBS | Chr11 | 12685421 | C-A | HET | ||
| SBS | Chr12 | 1317994 | C-T | Homo | ||
| SBS | Chr12 | 26303622 | G-A | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 614294 | 614296 | 2 | |
| Deletion | Chr11 | 1097001 | 1149000 | 51999 | 8 |
| Deletion | Chr11 | 1882135 | 1882138 | 3 | |
| Deletion | Chr4 | 2215589 | 2215592 | 3 | |
| Deletion | Chr5 | 3906050 | 3906054 | 4 | LOC_Os05g07340 |
| Deletion | Chr6 | 9820001 | 9876000 | 55999 | 7 |
| Deletion | Chr11 | 10315013 | 10315028 | 15 | |
| Deletion | Chr5 | 14110293 | 14110297 | 4 | |
| Deletion | Chr3 | 20237594 | 20237598 | 4 | |
| Deletion | Chr5 | 21302619 | 21302639 | 20 | |
| Deletion | Chr2 | 21516092 | 21516103 | 11 | |
| Deletion | Chr9 | 21869950 | 21869960 | 10 | |
| Deletion | Chr11 | 22184103 | 22184118 | 15 | |
| Deletion | Chr7 | 26790530 | 26790532 | 2 | |
| Deletion | Chr4 | 30751417 | 30751418 | 1 | LOC_Os04g51860 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 15780243 | 15780244 | 2 | |
| Insertion | Chr7 | 1490345 | 1490349 | 5 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 2253845 | 2274176 | 2 |
| Inversion | Chr4 | 29716973 | 30455776 | LOC_Os04g49850 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2191198 | Chr8 | 18216283 | |
| Translocation | Chr7 | 14356422 | Chr6 | 14832856 | 2 |
| Translocation | Chr8 | 15678044 | Chr4 | 2253847 | 2 |
| Translocation | Chr8 | 20134538 | Chr1 | 2999922 | LOC_Os01g06310 |
| Translocation | Chr7 | 21509071 | Chr3 | 4598302 | |
| Translocation | Chr7 | 21509081 | Chr3 | 4598314 | |
| Translocation | Chr6 | 25511500 | Chr2 | 12993064 |