Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41827538	G-A	Homo
SBS	Chr1	4203521	C-G	HET
SBS	Chr1	4203522	A-G	HET
SBS	Chr10	13151484	A-G	Homo
SBS	Chr10	1825212	T-C	HET
SBS	Chr10	22169754	A-G	HET
SBS	Chr11	28789263	C-T	HET
SBS	Chr11	5832180	C-T	Homo
SBS	Chr12	13445303	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23700
SBS	Chr12	14712631	G-C	HET
SBS	Chr12	9293109	G-A	Homo
SBS	Chr2	19817512	T-C	Homo
SBS	Chr2	23416620	G-C	HET
SBS	Chr2	34922700	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g57010
SBS	Chr3	10370130	C-A	Homo
SBS	Chr3	16596336	G-A	HET
SBS	Chr3	5715374	T-G	HET
SBS	Chr3	6982178	T-A	Homo	STOP_GAINED	LOC_Os03g12940
SBS	Chr4	11843023	T-G	HET
SBS	Chr4	21268215	T-C	HET
SBS	Chr5	8866403	A-G	Homo
SBS	Chr6	14656308	A-T	HET
SBS	Chr6	17186426	G-A	Homo
SBS	Chr7	18987193	A-G	Homo
SBS	Chr8	17714278	A-T	HET
SBS	Chr8	20809514	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33360
SBS	Chr8	8748252	A-C	HET
SBS	Chr9	20434699	A-G	HET
SBS	Chr9	6389790	G-A	HET
SBS	Chr9	8065574	C-A	Homo

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1935675	1935676	1
Deletion	Chr6	2157001	2198000	40999	8
Deletion	Chr4	2962584	2962593	9
Deletion	Chr2	3744001	3899000	154999	23
Deletion	Chr2	3909001	3930000	20999	5
Deletion	Chr5	6474237	6474238	1
Deletion	Chr7	9735001	9758000	22999	4
Deletion	Chr5	11376785	11376787	2	LOC_Os05g19550
Deletion	Chr9	12526450	12526455	5
Deletion	Chr7	12916056	12916060	4
Deletion	Chr3	14250001	14262000	11999	4
Deletion	Chr1	16907493	16907495	2	LOC_Os01g30956
Deletion	Chr7	19435961	19435962	1
Deletion	Chr12	21211813	21211819	6	LOC_Os12g34850
Deletion	Chr4	21255001	21262000	6999	LOC_Os04g34976
Deletion	Chr7	21472993	21472994	1	LOC_Os07g35880
Deletion	Chr7	21631149	21631151	2
Deletion	Chr10	22753561	22753564	3
Deletion	Chr12	24959001	24966000	6999	3
Deletion	Chr3	26539745	26539746	1
Deletion	Chr6	31129001	31249000	119999	20
Deletion	Chr1	43077001	43271000	193999	33

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	3695712	3695713	2
Insertion	Chr7	6526429	6526429	1
Insertion	Chr9	219265	219265	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4057488	4089228	2
Inversion	Chr8	21032293	21558957
Inversion	Chr4	26535161	26535507	LOC_Os04g44820

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1053644	Chr1	2701864	LOC_Os01g05660
Translocation	Chr4	14939507	Chr3	20879973	LOC_Os04g25750
Translocation	Chr9	17271819	Chr4	4107386	LOC_Os04g07720
Translocation	Chr8	20646116	Chr7	1745293	LOC_Os07g04110
Translocation	Chr8	21031610	Chr1	43232833	LOC_Os01g74650
Translocation	Chr8	21558934	Chr1	43076649
Translocation	Chr6	31123345	Chr3	36205767

Main menu