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Mutant Information |
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Mutant Name | FN3869-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3869-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 30
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 4203521 | C-G | HET | ||
SBS | Chr1 | 4203522 | A-G | HET | ||
SBS | Chr1 | 41827538 | G-A | Homo | ||
SBS | Chr2 | 19817512 | T-C | Homo | ||
SBS | Chr2 | 23416620 | G-C | HET | ||
SBS | Chr2 | 34922700 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g57010 |
SBS | Chr3 | 5715374 | T-G | HET | ||
SBS | Chr3 | 6982178 | T-A | Homo | STOP_GAINED | LOC_Os03g12940 |
SBS | Chr3 | 10370130 | C-A | Homo | ||
SBS | Chr3 | 16596336 | G-A | HET | ||
SBS | Chr4 | 11843023 | T-G | HET | ||
SBS | Chr4 | 21268215 | T-C | HET | ||
SBS | Chr5 | 8866403 | A-G | Homo | ||
SBS | Chr6 | 14656308 | A-T | HET | ||
SBS | Chr6 | 17186426 | G-A | Homo | ||
SBS | Chr7 | 18987193 | A-G | Homo | ||
SBS | Chr8 | 8748252 | A-C | HET | ||
SBS | Chr8 | 17714278 | A-T | HET | ||
SBS | Chr8 | 20809514 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g33360 |
SBS | Chr9 | 6389790 | G-A | HET | ||
SBS | Chr9 | 8065574 | C-A | Homo | ||
SBS | Chr9 | 20434699 | A-G | HET | ||
SBS | Chr10 | 1825212 | T-C | HET | ||
SBS | Chr10 | 13151484 | A-G | Homo | ||
SBS | Chr10 | 22169754 | A-G | HET | ||
SBS | Chr11 | 5832180 | C-T | Homo | ||
SBS | Chr11 | 28789263 | C-T | HET | ||
SBS | Chr12 | 9293109 | G-A | Homo | ||
SBS | Chr12 | 13445303 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g23700 |
SBS | Chr12 | 14712631 | G-C | HET |
Deletions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 1935675 | 1935676 | 1 | |
Deletion | Chr6 | 2157001 | 2198000 | 40999 | 8 |
Deletion | Chr4 | 2962584 | 2962593 | 9 | |
Deletion | Chr2 | 3744001 | 3899000 | 154999 | 23 |
Deletion | Chr2 | 3909001 | 3930000 | 20999 | 5 |
Deletion | Chr5 | 6474237 | 6474238 | 1 | |
Deletion | Chr7 | 9735001 | 9758000 | 22999 | 4 |
Deletion | Chr5 | 11376785 | 11376787 | 2 | LOC_Os05g19550 |
Deletion | Chr9 | 12526450 | 12526455 | 5 | |
Deletion | Chr7 | 12916056 | 12916060 | 4 | |
Deletion | Chr3 | 14250001 | 14262000 | 11999 | 4 |
Deletion | Chr1 | 16907493 | 16907495 | 2 | LOC_Os01g30956 |
Deletion | Chr7 | 19435961 | 19435962 | 1 | |
Deletion | Chr12 | 21211813 | 21211819 | 6 | LOC_Os12g34850 |
Deletion | Chr4 | 21255001 | 21262000 | 6999 | LOC_Os04g34976 |
Deletion | Chr7 | 21472993 | 21472994 | 1 | LOC_Os07g35880 |
Deletion | Chr7 | 21631149 | 21631151 | 2 | |
Deletion | Chr10 | 22753561 | 22753564 | 3 | |
Deletion | Chr12 | 24959001 | 24966000 | 6999 | 3 |
Deletion | Chr3 | 26539745 | 26539746 | 1 | |
Deletion | Chr6 | 31129001 | 31249000 | 119999 | 20 |
Deletion | Chr1 | 43077001 | 43271000 | 193999 | 33 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 3695712 | 3695713 | 2 | |
Insertion | Chr7 | 6526429 | 6526429 | 1 | |
Insertion | Chr9 | 219265 | 219265 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 4057488 | 4089228 | 2 |
Inversion | Chr8 | 21032293 | 21558957 | |
Inversion | Chr4 | 26535161 | 26535507 | LOC_Os04g44820 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr3 | 1053644 | Chr1 | 2701864 | LOC_Os01g05660 |
Translocation | Chr4 | 14939507 | Chr3 | 20879973 | LOC_Os04g25750 |
Translocation | Chr9 | 17271819 | Chr4 | 4107386 | LOC_Os04g07720 |
Translocation | Chr8 | 20646116 | Chr7 | 1745293 | LOC_Os07g04110 |
Translocation | Chr8 | 21031610 | Chr1 | 43232833 | LOC_Os01g74650 |
Translocation | Chr8 | 21558934 | Chr1 | 43076649 | |
Translocation | Chr6 | 31123345 | Chr3 | 36205767 |