Search Results
| Mutant Information |
|---|
| Mutant Name | FN3871-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3871-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23446453 | T-A | HET | ||
| SBS | Chr1 | 31814633 | A-G | Homo | ||
| SBS | Chr2 | 29775951 | T-C | HET | ||
| SBS | Chr2 | 29775953 | T-C | HET | ||
| SBS | Chr3 | 6506541 | G-A | Homo | ||
| SBS | Chr3 | 19429898 | C-T | HET | ||
| SBS | Chr3 | 24374368 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g43610 |
| SBS | Chr3 | 26644574 | C-T | HET | ||
| SBS | Chr4 | 31420859 | G-A | Homo | ||
| SBS | Chr4 | 34950318 | C-T | Homo | ||
| SBS | Chr5 | 15409770 | C-T | HET | ||
| SBS | Chr6 | 6555233 | T-A | HET | ||
| SBS | Chr7 | 7430685 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g12950 |
| SBS | Chr7 | 28641946 | G-T | HET | ||
| SBS | Chr10 | 5163401 | A-T | HET | ||
| SBS | Chr11 | 17520066 | T-A | HET | ||
| SBS | Chr11 | 18009691 | T-C | HET | ||
| SBS | Chr11 | 21151999 | A-T | Homo | ||
| SBS | Chr11 | 22749654 | C-T | Homo | ||
| SBS | Chr12 | 1097345 | G-A | Homo | ||
| SBS | Chr12 | 1097346 | G-A | Homo | ||
| SBS | Chr12 | 3252388 | C-T | Homo | ||
| SBS | Chr12 | 13446113 | A-G | Homo | ||
| SBS | Chr12 | 18878616 | G-A | Homo |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 102985 | 102986 | 1 | |
| Deletion | Chr4 | 129337 | 129349 | 12 | |
| Deletion | Chr4 | 3093663 | 3093665 | 2 | |
| Deletion | Chr4 | 4540409 | 4540415 | 6 | |
| Deletion | Chr10 | 6473780 | 6473781 | 1 | |
| Deletion | Chr7 | 6650591 | 6650592 | 1 | |
| Deletion | Chr5 | 10686298 | 10686299 | 1 | |
| Deletion | Chr4 | 13541927 | 13541929 | 2 | |
| Deletion | Chr1 | 13873512 | 13873513 | 1 | LOC_Os01g24630 |
| Deletion | Chr3 | 13929172 | 13929180 | 8 | |
| Deletion | Chr12 | 15096012 | 15096013 | 1 | |
| Deletion | Chr11 | 15305374 | 15305375 | 1 | |
| Deletion | Chr7 | 15500282 | 15500283 | 1 | |
| Deletion | Chr6 | 19658001 | 19713000 | 54999 | 10 |
| Deletion | Chr12 | 20219001 | 20448000 | 228999 | 43 |
| Deletion | Chr10 | 20441714 | 20441715 | 1 | |
| Deletion | Chr3 | 20810676 | 20810677 | 1 | LOC_Os03g37500 |
| Deletion | Chr1 | 25279813 | 25279814 | 1 | |
| Deletion | Chr2 | 29727546 | 29727547 | 1 | |
| Deletion | Chr4 | 30312754 | 30312756 | 2 | LOC_Os04g51180 |
| Deletion | Chr1 | 30410246 | 30410247 | 1 | |
| Deletion | Chr4 | 32678204 | 32678207 | 3 |
Insertions: 6
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 26389806 | 26521752 | LOC_Os12g42680 |
| Inversion | Chr5 | 26395772 | 26871530 | LOC_Os05g45530 |
| Inversion | Chr5 | 26395795 | 26871546 | LOC_Os05g45530 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 985230 | Chr1 | 25907714 | LOC_Os08g02460 |
| Translocation | Chr10 | 1331033 | Chr7 | 28606607 | 2 |
| Translocation | Chr6 | 2783698 | Chr2 | 31115994 | LOC_Os06g06050 |
| Translocation | Chr6 | 2783704 | Chr2 | 31116564 | LOC_Os06g06050 |
| Translocation | Chr10 | 4623832 | Chr3 | 32491470 | |
| Translocation | Chr10 | 5113844 | Chr4 | 2989348 | |
| Translocation | Chr10 | 5265479 | Chr6 | 11799779 | |
| Translocation | Chr8 | 5979870 | Chr3 | 35071692 | |
| Translocation | Chr5 | 10844153 | Chr3 | 25789799 | LOC_Os05g18720 |
| Translocation | Chr12 | 22023464 | Chr8 | 27373391 | |
| Translocation | Chr11 | 22542297 | Chr9 | 15589160 | LOC_Os09g25960 |