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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6811604	A-T	HET
SBS	Chr1	8435159	G-A	HET
SBS	Chr1	16687835	G-T	Homo
SBS	Chr1	22613633	C-T	HET
SBS	Chr1	34977060	C-G	HET
SBS	Chr1	36934100	C-T	HET
SBS	Chr2	2495545	G-A	HET
SBS	Chr2	9445227	A-C	Homo
SBS	Chr2	11795839	G-A	HET	STOP_GAINED	LOC_Os02g20030
SBS	Chr2	33583618	A-T	HET
SBS	Chr3	21871447	C-T	HET
SBS	Chr3	27016272	A-G	HET
SBS	Chr3	30408311	A-G	HET
SBS	Chr4	1250333	G-C	HET
SBS	Chr4	13288479	C-G	HET
SBS	Chr4	14347046	C-G	HET
SBS	Chr5	22714201	T-C	HET
SBS	Chr6	16178073	A-C	Homo
SBS	Chr7	12712283	C-A	Homo
SBS	Chr7	15508273	A-G	Homo
SBS	Chr7	22442566	G-A	HET
SBS	Chr7	27652007	A-T	HET
SBS	Chr8	10361719	C-T	HET
SBS	Chr8	10576860	T-A	HET
SBS	Chr8	11755084	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19640
SBS	Chr8	21521246	C-T	HET
SBS	Chr10	6985296	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12548
SBS	Chr10	9034193	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17870
SBS	Chr10	16187662	G-A	HET
SBS	Chr10	22822941	G-A	HET
SBS	Chr10	23081693	G-A	HET
SBS	Chr11	3052022	C-T	HET
SBS	Chr11	13103164	C-A	HET
SBS	Chr11	26583519	G-A	HET
SBS	Chr12	13416386	T-A	HET
SBS	Chr12	15076764	T-A	HET

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	329915	329921	6
Deletion	Chr7	1100691	1100692	1
Deletion	Chr7	1451659	1451673	14
Deletion	Chr12	3696001	3711000	14999	2
Deletion	Chr2	4545111	4545114	3
Deletion	Chr10	10698803	10698805	2
Deletion	Chr5	11533001	11633000	99999	14
Deletion	Chr5	11640001	11712000	71999	9
Deletion	Chr11	13468942	13468945	3
Deletion	Chr7	13700719	13700721	2
Deletion	Chr4	14495251	14495256	5
Deletion	Chr8	15596167	15596182	15
Deletion	Chr7	16551931	16551943	12	LOC_Os07g28360
Deletion	Chr1	18243489	18243495	6	LOC_Os01g33136
Deletion	Chr9	18425005	18425006	1
Deletion	Chr12	19783924	19783925	1
Deletion	Chr5	20132807	20132808	1
Deletion	Chr10	21668001	21781000	112999	17
Deletion	Chr10	21784001	21857000	72999	9
Deletion	Chr4	22583035	22583047	12
Deletion	Chr3	23040026	23040035	9
Deletion	Chr11	25388001	25406000	17999	2
Deletion	Chr11	25416001	25631000	214999	39
Deletion	Chr7	25454778	25454780	2	LOC_Os07g42530
Deletion	Chr11	25636001	25662000	25999	4
Deletion	Chr4	25950707	25950719	12
Deletion	Chr6	26149823	26149837	14
Deletion	Chr6	28018001	28050000	31999	4
Deletion	Chr6	28052001	28060000	7999	2
Deletion	Chr1	35231137	35231138	1	LOC_Os01g60910

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	25315637	25315637	1	LOC_Os04g42770

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	357715	444038	LOC_Os07g01750
Inversion	Chr7	357719	444041	LOC_Os07g01750
Inversion	Chr10	15430681	15530667	LOC_Os10g29670
Inversion	Chr10	15430683	16138536	LOC_Os10g29670
Inversion	Chr7	17769311	17769747	LOC_Os07g30110
Inversion	Chr10	21410549	21664552
Inversion	Chr12	22583591	22583921

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	15530667	Chr6	28017518
Translocation	Chr10	21859629	Chr6	28020274	2

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