Search Results
| Mutant Information |
|---|
| Mutant Name | FN3889-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3889-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3393632 | G-A | Homo | ||
| SBS | Chr1 | 7408257 | T-C | Homo | ||
| SBS | Chr1 | 7518138 | G-T | Homo | ||
| SBS | Chr1 | 9620966 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g16850 |
| SBS | Chr1 | 33618573 | A-G | HET | ||
| SBS | Chr2 | 293548 | C-T | HET | ||
| SBS | Chr2 | 2366419 | G-T | HET | ||
| SBS | Chr2 | 18733011 | C-T | Homo | ||
| SBS | Chr3 | 487107 | C-T | HET | ||
| SBS | Chr3 | 17576489 | G-A | HET | ||
| SBS | Chr4 | 8476830 | C-T | Homo | ||
| SBS | Chr4 | 9750436 | T-C | HET | ||
| SBS | Chr4 | 33146881 | A-T | HET | ||
| SBS | Chr5 | 11749525 | G-A | Homo | ||
| SBS | Chr5 | 15450988 | A-G | HET | ||
| SBS | Chr5 | 19583032 | G-A | HET | ||
| SBS | Chr5 | 23519537 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g40040 |
| SBS | Chr5 | 27634735 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g48200 |
| SBS | Chr6 | 30436203 | G-A | Homo | ||
| SBS | Chr7 | 20783800 | G-A | Homo | ||
| SBS | Chr8 | 7160701 | C-T | HET | ||
| SBS | Chr8 | 13777220 | G-A | HET | ||
| SBS | Chr8 | 20736440 | C-T | HET | ||
| SBS | Chr8 | 20779964 | T-A | HET | STOP_GAINED | LOC_Os08g33320 |
| SBS | Chr9 | 8550350 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14460 |
| SBS | Chr10 | 12449120 | C-T | Homo | ||
| SBS | Chr10 | 13970868 | A-G | HET | ||
| SBS | Chr10 | 18863398 | T-C | HET | ||
| SBS | Chr11 | 15885953 | C-T | Homo | ||
| SBS | Chr11 | 24892805 | A-T | HET | STOP_LOST | LOC_Os11g41500 |
| SBS | Chr11 | 24988027 | G-A | HET | ||
| SBS | Chr12 | 10363930 | T-C | HET | ||
| SBS | Chr12 | 10584318 | G-A | HET | ||
| SBS | Chr12 | 12720356 | A-T | HET | ||
| SBS | Chr12 | 13112812 | A-T | HET | ||
| SBS | Chr12 | 24772947 | G-A | Homo |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 206403 | 206406 | 3 | LOC_Os12g01350 |
| Deletion | Chr8 | 1150325 | 1150327 | 2 | LOC_Os08g02730 |
| Deletion | Chr9 | 1977223 | 1977226 | 3 | |
| Deletion | Chr1 | 7518266 | 7518271 | 5 | LOC_Os01g13480 |
| Deletion | Chr1 | 7925923 | 7925927 | 4 | |
| Deletion | Chr11 | 7984950 | 7984957 | 7 | |
| Deletion | Chr3 | 8273578 | 8273583 | 5 | LOC_Os03g15140 |
| Deletion | Chr1 | 9199213 | 9199229 | 16 | |
| Deletion | Chr12 | 9383940 | 9383948 | 8 | LOC_Os12g16390 |
| Deletion | Chr3 | 12759629 | 12759656 | 27 | |
| Deletion | Chr5 | 13287153 | 13287156 | 3 | |
| Deletion | Chr3 | 13362876 | 13362877 | 1 | LOC_Os03g23110 |
| Deletion | Chr11 | 13631614 | 13631623 | 9 | |
| Deletion | Chr12 | 15425789 | 15425790 | 1 | LOC_Os12g26400 |
| Deletion | Chr6 | 15647883 | 15647891 | 8 | |
| Deletion | Chr12 | 18950977 | 18950983 | 6 | |
| Deletion | Chr5 | 23575863 | 23575865 | 2 | LOC_Os05g40140 |
| Deletion | Chr1 | 26647697 | 26647698 | 1 | |
| Deletion | Chr2 | 27577232 | 27577234 | 2 | |
| Deletion | Chr2 | 32170213 | 32170214 | 1 | |
| Deletion | Chr3 | 34473202 | 34473203 | 1 | |
| Deletion | Chr2 | 34542558 | 34542559 | 1 | |
| Deletion | Chr1 | 36847121 | 36847122 | 1 | LOC_Os01g63550 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr9 | 10315700 | 10315701 | 2 | |
| Insertion | Chr8 | 6448074 | 6448074 | 1 | |
| Insertion | Chr10 | 898384 | 898384 | 1 | |
| Insertion | Chr11 | 7153900 | 7153900 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 2012511 | 2012703 | LOC_Os06g04610 |
| Inversion | Chr6 | 13079186 | 13355413 | |
| Inversion | Chr6 | 13079189 | 13355463 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 5484403 | Chr2 | 14658145 | |
| Translocation | Chr12 | 11544835 | Chr1 | 23512574 | |
| Translocation | Chr8 | 12109439 | Chr2 | 9635747 | LOC_Os08g20180 |
| Translocation | Chr7 | 15587356 | Chr2 | 950260 | |
| Translocation | Chr7 | 15587365 | Chr2 | 949876 | |
| Translocation | Chr2 | 16887653 | Chr1 | 16560143 | LOC_Os01g29540 |
| Translocation | Chr12 | 22800132 | Chr8 | 17299284 | 2 |