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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10743558	C-G	Homo
SBS	Chr1	10783051	G-T	Homo
SBS	Chr1	1221918	G-C	Homo
SBS	Chr1	22150845	G-A	HET
SBS	Chr1	22620520	T-C	HET
SBS	Chr1	22620546	G-A	HET
SBS	Chr1	31237437	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54290
SBS	Chr1	36040411	T-C	HET
SBS	Chr1	37885638	G-C	HET
SBS	Chr1	8921853	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g15840
SBS	Chr10	4080506	A-G	HET
SBS	Chr10	5217317	G-A	HET
SBS	Chr10	5217318	C-T	HET
SBS	Chr11	20882666	A-G	Homo
SBS	Chr12	19543623	A-G	HET
SBS	Chr2	10199560	T-A	Homo
SBS	Chr2	13998022	G-T	Homo
SBS	Chr2	16391596	G-A	Homo
SBS	Chr2	16734494	A-C	Homo
SBS	Chr3	13115868	T-A	Homo
SBS	Chr3	14956792	A-G	Homo
SBS	Chr3	16817393	G-C	HET
SBS	Chr3	1838424	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	4642205	T-G	Homo
SBS	Chr4	15325223	C-A	HET	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	19045630	C-T	Homo
SBS	Chr5	13442057	C-A	Homo
SBS	Chr5	18217872	T-C	Homo
SBS	Chr5	19050524	G-A	Homo
SBS	Chr5	20369899	T-A	Homo
SBS	Chr5	5745811	G-A	Homo
SBS	Chr5	8327082	G-A	Homo	STOP_GAINED	LOC_Os05g14610
SBS	Chr6	20211010	G-A	HET
SBS	Chr6	25778143	G-A	HET
SBS	Chr6	27210353	C-A	HET
SBS	Chr6	27210355	G-T	HET
SBS	Chr6	4066750	T-C	HET
SBS	Chr7	18745419	G-T	HET
SBS	Chr8	17498743	G-A	HET
SBS	Chr8	17705338	C-T	HET
SBS	Chr9	6861022	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g12140

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	395411	395431	20
Deletion	Chr10	1637843	1637851	8
Deletion	Chr7	2037667	2037668	1
Deletion	Chr11	2702995	2703001	6
Deletion	Chr11	4259604	4259605	1
Deletion	Chr5	5710428	5710432	4
Deletion	Chr5	6189093	6189111	18	LOC_Os05g11040
Deletion	Chr8	9371464	9371468	4
Deletion	Chr7	12351243	12351244	1
Deletion	Chr7	13112001	13400000	287999	44
Deletion	Chr10	13292366	13292368	2
Deletion	Chr5	13458847	13458853	6
Deletion	Chr2	16295448	16295450	2	LOC_Os02g27520
Deletion	Chr8	17500565	17500574	9	LOC_Os08g28650
Deletion	Chr6	18253550	18253551	1
Deletion	Chr12	20137614	20137628	14
Deletion	Chr12	20914499	20914503	4
Deletion	Chr8	22143860	22143866	6
Deletion	Chr7	27344955	27344956	1	LOC_Os07g45820
Deletion	Chr7	29394012	29394016	4
Deletion	Chr1	34586021	34586030	9	LOC_Os01g59800

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	26865288	26865315	28

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4625009	5100467	2
Inversion	Chr1	4625017	5100470	2
Inversion	Chr2	7666562	8121405	LOC_Os02g14720
Inversion	Chr2	7666571	8121409	LOC_Os02g14720

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5559728	Chr7	10762024	LOC_Os10g10140
Translocation	Chr10	12580401	Chr8	14922478
Translocation	Chr11	13698736	Chr8	10034770
Translocation	Chr12	13719929	Chr7	13401486	LOC_Os07g23740
Translocation	Chr12	26966677	Chr6	4303675

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