Search Nipponbare


Mutant Information

Mutant NameFN3902-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3902-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 49
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr126513128C-AHET
SBSChr13026804T-CHET
SBSChr138878551T-AHET
SBSChr13905569T-AHomo
SBSChr139389213T-CHETNON_SYNONYMOUS_CODINGLOC_Os01g67770
SBSChr1016399902C-THomo
SBSChr1016399903C-THomo
SBSChr1110483476C-GHET
SBSChr1115730248C-THET
SBSChr122680001G-AHomoNON_SYNONYMOUS_CODINGLOC_Os12g05810
SBSChr122680002T-AHomo
SBSChr124505540T-CHomo
SBSChr124785637T-CHET
SBSChr128581098A-THomo
SBSChr223890229C-THET
SBSChr225068361C-GHET
SBSChr230033062G-THETNON_SYNONYMOUS_CODINGLOC_Os02g49110
SBSChr231459376G-AHET
SBSChr25001701T-AHET
SBSChr27648414A-CHET
SBSChr3698138C-THET
SBSChr414088902A-GHETNON_SYNONYMOUS_CODINGLOC_Os04g24550
SBSChr429884868A-GHomo
SBSChr46809689T-AHETNON_SYNONYMOUS_CODINGLOC_Os04g12340
SBSChr48058534A-GHET
SBSChr515456420G-THomoNON_SYNONYMOUS_CODINGLOC_Os05g26600
SBSChr525128559C-THET
SBSChr56248957G-AHomo
SBSChr614270898C-THET
SBSChr619965552G-AHomo
SBSChr621756477T-CHomo
SBSChr718011209G-THET
SBSChr719711841T-GHET
SBSChr721668739G-THETNON_SYNONYMOUS_CODINGLOC_Os07g36250
SBSChr725354158G-AHET
SBSChr729097753T-CHET
SBSChr73819081G-THET
SBSChr812822436C-AHomoNON_SYNONYMOUS_CODINGLOC_Os08g21520
SBSChr814990062T-AHomo
SBSChr817195254A-THET
SBSChr817766882G-CHomoNON_SYNONYMOUS_CODINGLOC_Os08g29020
SBSChr823056907A-THET
SBSChr826903809A-THET
SBSChr828167050G-AHomo
SBSChr917959141C-THET
SBSChr918575219G-CHET
SBSChr922800631C-GHETNON_SYNONYMOUS_CODINGLOC_Os09g39750
SBSChr93750834G-THomo
SBSChr99928089G-AHomo

Deletions: 17
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr11387342338734263
DeletionChr10437726543772694LOC_Os10g08080
DeletionChr12766116876611724
DeletionChr8813005481300562
DeletionChr112387764123877695
DeletionChr812784043127840485
DeletionChr41339200113414000219992
DeletionChr716435439164354412
DeletionChr1181169971811700710LOC_Os01g32990
DeletionChr120602131206021332LOC_Os01g36950
DeletionChr6216222872162231528
DeletionChr422330955223309572LOC_Os04g37500
DeletionChr525261430252614399LOC_Os05g43450
DeletionChr226872551268725543LOC_Os02g44380
DeletionChr327645383276453841
DeletionChr328405802284058031
DeletionChr232216566322165715

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr112931417129314182
InsertionChr118133783181337831
InsertionChr44808314808311
InsertionChr6160469261604693510

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr52480637325614576
InversionChr52480638525614577
InversionChr13718502737185370LOC_Os01g64020

Translocations: 5
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr84306960Chr625086676
TranslocationChr1017323126Chr123664817
TranslocationChr1224332919Chr320216542
TranslocationChr428786005Chr315786019
TranslocationChr428786015Chr315777973