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Mutant Information

Mutant Name	FN3905-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3905-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21673211	C-A	Homo
SBS	Chr1	41714113	T-G	Homo
SBS	Chr10	10945658	T-A	HET
SBS	Chr10	11281119	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21910
SBS	Chr10	19697185	G-T	HET
SBS	Chr2	11116893	T-C	Homo
SBS	Chr2	33968281	G-A	HET
SBS	Chr3	1843140	A-T	HET
SBS	Chr3	988470	A-G	HET
SBS	Chr4	34101932	T-A	HET
SBS	Chr5	13915570	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24120
SBS	Chr5	7943944	A-T	HET
SBS	Chr6	16598584	A-T	HET
SBS	Chr6	7587834	A-G	HET
SBS	Chr7	5646876	G-A	Homo
SBS	Chr8	8277153	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13860

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1500493	1500511	18
Deletion	Chr2	12143029	12143036	7
Deletion	Chr1	18610906	18610907	1	LOC_Os01g33800
Deletion	Chr1	19528001	19556000	27999	7
Deletion	Chr1	19565001	19823000	257999	39
Deletion	Chr1	19826001	20162000	335999	52
Deletion	Chr11	26728041	26728043	2
Deletion	Chr5	29207001	29259000	51999	10

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	19754378	19754381	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16787219	16957913	LOC_Os05g28930
Inversion	Chr5	16787229	16957921	LOC_Os05g28930
Inversion	Chr5	29066566	29216399	LOC_Os05g50910
Inversion	Chr5	29256433	29261834	LOC_Os05g50990

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	986545	Chr1	19785007	2
Translocation	Chr9	7433704	Chr5	29261269	LOC_Os05g50990
Translocation	Chr9	7433706	Chr5	29261630	LOC_Os05g50990
Translocation	Chr8	9987880	Chr7	8235911	LOC_Os08g16370
Translocation	Chr11	13416315	Chr3	21806999	LOC_Os03g39250
Translocation	Chr12	26359861	Chr4	21212459