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| Mutant Information |
|---|
| Mutant Name | FN3906-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3906-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15156472 | T-C | HET | ||
| SBS | Chr1 | 16271921 | T-G | HET | ||
| SBS | Chr1 | 28566540 | A-T | Homo | ||
| SBS | Chr1 | 40685653 | T-A | HET | ||
| SBS | Chr1 | 41995244 | A-C | HET | STOP_GAINED | LOC_Os01g72400 |
| SBS | Chr10 | 15053605 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g28890 |
| SBS | Chr10 | 5486005 | T-A | Homo | ||
| SBS | Chr12 | 20409387 | C-G | HET | ||
| SBS | Chr12 | 2387085 | C-A | HET | ||
| SBS | Chr12 | 8954890 | G-T | Homo | ||
| SBS | Chr2 | 17558991 | G-A | HET | ||
| SBS | Chr2 | 3045140 | C-T | HET | ||
| SBS | Chr2 | 34991906 | A-C | HET | ||
| SBS | Chr3 | 35809779 | G-A | HET | ||
| SBS | Chr4 | 1538725 | C-T | HET | ||
| SBS | Chr4 | 24273744 | C-A | HET | ||
| SBS | Chr4 | 2644661 | C-T | HET | ||
| SBS | Chr4 | 2644662 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05310 |
| SBS | Chr4 | 35206596 | T-A | Homo | ||
| SBS | Chr5 | 12779115 | G-A | Homo | ||
| SBS | Chr5 | 1851521 | T-G | HET | ||
| SBS | Chr5 | 21936310 | A-G | Homo | ||
| SBS | Chr5 | 29465616 | A-T | Homo | ||
| SBS | Chr6 | 19715107 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g33890 |
| SBS | Chr6 | 28081188 | T-G | HET | ||
| SBS | Chr7 | 12351474 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g22100 |
| SBS | Chr7 | 14026266 | C-T | Homo | ||
| SBS | Chr8 | 18831321 | C-T | Homo | ||
| SBS | Chr8 | 8072880 | A-T | HET | ||
| SBS | Chr9 | 20395046 | A-C | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 2633554 | 2633560 | 6 | |
| Deletion | Chr5 | 7406034 | 7406035 | 1 | |
| Deletion | Chr2 | 8888674 | 8888675 | 1 | |
| Deletion | Chr7 | 10991482 | 10991506 | 24 | |
| Deletion | Chr6 | 11989642 | 11989643 | 1 | LOC_Os06g20790 |
| Deletion | Chr12 | 12029895 | 12029896 | 1 | |
| Deletion | Chr3 | 16010141 | 16010146 | 5 | LOC_Os03g27870 |
| Deletion | Chr11 | 18713895 | 18713897 | 2 | LOC_Os11g31840 |
| Deletion | Chr4 | 23667291 | 23667292 | 1 | LOC_Os04g39710 |
| Deletion | Chr3 | 23878924 | 23878927 | 3 | |
| Deletion | Chr7 | 25048823 | 25048849 | 26 | |
| Deletion | Chr4 | 28947442 | 28947443 | 1 |
Insertions: 7
No Inversion
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 1483425 | Chr3 | 30859299 | |
| Translocation | Chr7 | 11200526 | Chr3 | 25420806 | 2 |
| Translocation | Chr12 | 11834253 | Chr3 | 15244266 | 2 |
| Translocation | Chr7 | 13571133 | Chr1 | 17298369 | |
| Translocation | Chr8 | 15015619 | Chr6 | 14816504 | LOC_Os08g24810 |
| Translocation | Chr8 | 16611515 | Chr1 | 14561815 | LOC_Os08g27190 |
| Translocation | Chr7 | 22813469 | Chr4 | 23951096 | |
| Translocation | Chr11 | 27705534 | Chr5 | 23588676 | 2 |
| Translocation | Chr11 | 28758932 | Chr8 | 17178870 | LOC_Os11g47600 |
| Translocation | Chr6 | 29547885 | Chr4 | 5348074 |