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| Mutant Information |
|---|
| Mutant Name | FN3918-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3918-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14958815 | G-A | HET | ||
| SBS | Chr1 | 14977561 | G-T | HET | ||
| SBS | Chr1 | 16182323 | G-A | HET | ||
| SBS | Chr1 | 17067205 | A-G | HET | ||
| SBS | Chr1 | 7578187 | T-C | Homo | ||
| SBS | Chr11 | 17931153 | C-T | HET | ||
| SBS | Chr12 | 21027567 | T-A | Homo | ||
| SBS | Chr12 | 2324001 | C-T | Homo | ||
| SBS | Chr2 | 29857463 | A-T | HET | ||
| SBS | Chr2 | 30621811 | T-C | Homo | ||
| SBS | Chr3 | 15843694 | T-G | HET | ||
| SBS | Chr3 | 27947795 | C-T | Homo | ||
| SBS | Chr3 | 4015351 | G-A | Homo | STOP_GAINED | LOC_Os03g07890 |
| SBS | Chr3 | 9108693 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g16530 |
| SBS | Chr5 | 2682603 | A-G | HET | ||
| SBS | Chr6 | 24686047 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g41250 |
| SBS | Chr7 | 16501624 | A-G | HET | ||
| SBS | Chr7 | 5553100 | G-A | HET | ||
| SBS | Chr7 | 8446954 | A-T | HET | ||
| SBS | Chr8 | 11943516 | A-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1091573 | 1091590 | 17 | |
| Deletion | Chr12 | 2660187 | 2660194 | 7 | LOC_Os12g05770 |
| Deletion | Chr4 | 2872949 | 2873059 | 110 | |
| Deletion | Chr1 | 3222683 | 3222684 | 1 | LOC_Os01g06790 |
| Deletion | Chr4 | 4883844 | 4883849 | 5 | LOC_Os04g08832 |
| Deletion | Chr4 | 5406611 | 5406612 | 1 | |
| Deletion | Chr3 | 9468474 | 9468481 | 7 | |
| Deletion | Chr6 | 14475803 | 14475817 | 14 | |
| Deletion | Chr8 | 25659452 | 25659458 | 6 | |
| Deletion | Chr6 | 26448001 | 26862000 | 413999 | 59 |
| Deletion | Chr7 | 26828542 | 26828543 | 1 | |
| Deletion | Chr6 | 26871001 | 26914000 | 42999 | 7 |
| Deletion | Chr6 | 27204001 | 27274000 | 69999 | 13 |
| Deletion | Chr1 | 40122373 | 40122379 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 770015 | 770016 | 2 | |
| Insertion | Chr3 | 31150166 | 31150169 | 4 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 12951525 | 12972379 | LOC_Os08g21695 |
| Inversion | Chr4 | 24617791 | 25048228 | LOC_Os04g41510 |
| Inversion | Chr4 | 24617795 | 25048234 | LOC_Os04g41510 |
| Inversion | Chr6 | 26448900 | 27206109 | |
| Inversion | Chr6 | 27170611 | 27275665 | LOC_Os06g45100 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 7073666 | Chr7 | 17406846 | 2 |
| Translocation | Chr6 | 7290184 | Chr2 | 23232074 | |
| Translocation | Chr8 | 10208757 | Chr6 | 27273028 | 2 |
| Translocation | Chr8 | 10208764 | Chr6 | 27275501 | 2 |
| Translocation | Chr12 | 10516472 | Chr2 | 29857006 | |
| Translocation | Chr12 | 10517647 | Chr2 | 29856886 | |
| Translocation | Chr2 | 11547014 | Chr1 | 38746611 | LOC_Os02g19730 |
| Translocation | Chr5 | 19291806 | Chr2 | 17063945 | |
| Translocation | Chr7 | 19555680 | Chr3 | 15104039 | |
| Translocation | Chr4 | 20728276 | Chr1 | 1970546 | |
| Translocation | Chr7 | 24193005 | Chr6 | 27170610 |