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| Mutant Information |
|---|
| Mutant Name | FN3939-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3939-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10633731 | G-C | Homo | ||
| SBS | Chr1 | 14537681 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g25650 |
| SBS | Chr1 | 14954797 | G-A | Homo | ||
| SBS | Chr1 | 1662781 | T-A | Homo | ||
| SBS | Chr1 | 23748374 | G-A | Homo | ||
| SBS | Chr1 | 28811337 | T-C | HET | ||
| SBS | Chr1 | 29528523 | C-T | HET | ||
| SBS | Chr1 | 32826509 | C-T | HET | ||
| SBS | Chr1 | 9639204 | C-G | HET | ||
| SBS | Chr11 | 13316678 | C-T | HET | ||
| SBS | Chr11 | 15133454 | G-A | HET | ||
| SBS | Chr11 | 26032957 | G-A | Homo | ||
| SBS | Chr11 | 9674140 | G-A | HET | ||
| SBS | Chr12 | 25860885 | T-C | Homo | ||
| SBS | Chr12 | 3477469 | G-C | HET | ||
| SBS | Chr2 | 6420533 | C-T | HET | ||
| SBS | Chr3 | 33511075 | G-A | HET | ||
| SBS | Chr3 | 5024961 | G-A | Homo | ||
| SBS | Chr4 | 11703643 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20850 |
| SBS | Chr4 | 21386815 | C-G | Homo | ||
| SBS | Chr4 | 4773826 | G-A | HET | ||
| SBS | Chr5 | 3522466 | A-T | HET | ||
| SBS | Chr5 | 8155459 | C-T | HET | ||
| SBS | Chr6 | 13809830 | C-T | HET | ||
| SBS | Chr6 | 24208846 | A-T | HET | ||
| SBS | Chr6 | 25133355 | C-T | HET | ||
| SBS | Chr9 | 607910 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g01900 |
| SBS | Chr9 | 607911 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g01900 |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 2491842 | 2491855 | 13 | LOC_Os08g04880 |
| Deletion | Chr12 | 2751001 | 2916000 | 164999 | 18 |
| Deletion | Chr6 | 4935001 | 4965000 | 29999 | 5 |
| Deletion | Chr11 | 6235049 | 6235057 | 8 | |
| Deletion | Chr5 | 6426636 | 6426668 | 32 | |
| Deletion | Chr10 | 6835678 | 6835679 | 1 | |
| Deletion | Chr11 | 8077483 | 8077495 | 12 | LOC_Os11g14380 |
| Deletion | Chr10 | 11955561 | 11955566 | 5 | |
| Deletion | Chr6 | 13352156 | 13352157 | 1 | |
| Deletion | Chr4 | 14879283 | 14879287 | 4 | |
| Deletion | Chr12 | 15554035 | 15554044 | 9 | |
| Deletion | Chr3 | 21448426 | 21448427 | 1 | |
| Deletion | Chr4 | 23541906 | 23541909 | 3 | |
| Deletion | Chr11 | 24275661 | 24275662 | 1 | |
| Deletion | Chr5 | 29421915 | 29421916 | 1 | LOC_Os05g51290 |
| Deletion | Chr1 | 41621721 | 41621722 | 1 | LOC_Os01g71850 |
No Insertion
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 2157778 | 2571669 | 2 |
| Inversion | Chr12 | 2157784 | 2571676 | 2 |
| Inversion | Chr10 | 11931683 | 12893446 | 2 |
| Inversion | Chr10 | 11931696 | 12893448 | 2 |
| Inversion | Chr1 | 35821451 | 36411521 | LOC_Os01g62870 |
| Inversion | Chr1 | 35821467 | 36411594 | LOC_Os01g62870 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6248354 | Chr8 | 4190745 | |
| Translocation | Chr8 | 21684697 | Chr2 | 16774482 | |
| Translocation | Chr7 | 26712271 | Chr4 | 33521208 | |
| Translocation | Chr12 | 27167807 | Chr6 | 16774721 | LOC_Os06g29350 |
| Translocation | Chr4 | 27767226 | Chr1 | 21792021 | LOC_Os04g46860 |
| Translocation | Chr4 | 27767561 | Chr1 | 21792009 |