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Mutant Information

Mutant Name	FN3949-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3949-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13561897	T-C	Homo
SBS	Chr10	18023300	A-G	HET
SBS	Chr10	18882311	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g35310
SBS	Chr10	21140916	C-A	HET
SBS	Chr12	9504115	G-C	HET
SBS	Chr2	17138005	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g28960
SBS	Chr3	10509251	C-T	HET
SBS	Chr4	25249516	T-C	HET
SBS	Chr4	30790331	C-T	HET
SBS	Chr4	8902812	T-C	Homo
SBS	Chr5	19504670	A-G	Homo
SBS	Chr5	25766410	T-C	Homo
SBS	Chr7	12499663	C-T	Homo
SBS	Chr7	6119838	T-C	HET
SBS	Chr7	699493	C-A	HET
SBS	Chr8	24912587	G-A	HET
SBS	Chr8	27565723	G-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2499782	2499783	1
Deletion	Chr5	3419137	3419145	8
Deletion	Chr5	7657550	7657551	1
Deletion	Chr5	7775397	7775404	7
Deletion	Chr7	11860001	11897000	36999	5
Deletion	Chr8	12270080	12270087	7
Deletion	Chr11	12792500	12792517	17	LOC_Os11g22310
Deletion	Chr9	14145358	14145368	10
Deletion	Chr5	15022488	15022491	3
Deletion	Chr9	15551395	15551399	4
Deletion	Chr4	19633966	19633975	9
Deletion	Chr5	20601596	20601600	4	LOC_Os05g34730
Deletion	Chr2	20773376	20773392	16
Deletion	Chr9	22752113	22752114	1
Deletion	Chr8	26773401	26773403	2
Deletion	Chr4	29385503	29385513	10
Deletion	Chr3	30923312	30923383	71
Deletion	Chr1	34981865	34981866	1	LOC_Os01g60490
Deletion	Chr1	40107058	40107060	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	6884218	6884219	2

No Inversion

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4604520	Chr1	7703824
Translocation	Chr5	17159748	Chr1	28343589	LOC_Os05g29690
Translocation	Chr5	17163176	Chr1	28343605
Translocation	Chr5	17163182	Chr1	29786463	LOC_Os01g51810
Translocation	Chr5	17164141	Chr1	29786465	LOC_Os01g51810
Translocation	Chr10	18651219	Chr6	20546991	LOC_Os06g35220
Translocation	Chr10	18651225	Chr6	20547179	LOC_Os06g35220
Translocation	Chr12	19763183	Chr5	15788925