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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22995464	A-G	Homo
SBS	Chr10	10480268	T-G	Homo
SBS	Chr10	10480272	T-C	Homo
SBS	Chr10	5619500	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g10214
SBS	Chr11	1832646	T-A	HET
SBS	Chr12	10034894	G-T	HET
SBS	Chr12	24242495	C-T	Homo
SBS	Chr2	2448033	A-T	HET
SBS	Chr2	4880312	T-A	HET
SBS	Chr3	20712719	G-A	HET
SBS	Chr3	20747905	T-A	HET
SBS	Chr3	20747906	G-A	HET
SBS	Chr3	9863238	T-C	HET
SBS	Chr4	16326011	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g27610
SBS	Chr4	1723377	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03830
SBS	Chr4	1723378	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03830
SBS	Chr4	19486624	A-G	HET
SBS	Chr4	6037365	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g11090
SBS	Chr5	501023	G-A	HET
SBS	Chr5	501026	C-A	HET
SBS	Chr5	7044444	G-A	HET
SBS	Chr5	8434291	G-A	Homo
SBS	Chr6	17209081	T-A	HET
SBS	Chr7	1065828	A-G	Homo
SBS	Chr7	16719690	A-G	HET
SBS	Chr7	16916733	G-T	HET
SBS	Chr7	5007175	G-C	HET
SBS	Chr8	15349949	A-G	HET
SBS	Chr8	1620755	G-A	Homo
SBS	Chr8	22283208	G-A	HET
SBS	Chr8	23062929	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g36520
SBS	Chr9	11709355	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19570
SBS	Chr9	20032563	T-C	HET
SBS	Chr9	8381529	A-C	HET
SBS	Chr9	9490499	C-T	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	426872	426876	4	LOC_Os01g01800
Deletion	Chr2	9331638	9331642	4
Deletion	Chr5	12557799	12557801	2	LOC_Os05g21230
Deletion	Chr12	13335015	13335020	5
Deletion	Chr7	14100867	14100870	3	LOC_Os07g24810
Deletion	Chr6	17722338	17722343	5
Deletion	Chr2	19071601	19071621	20
Deletion	Chr7	19358072	19358074	2
Deletion	Chr2	20244001	20283000	38999	LOC_Os02g33980
Deletion	Chr6	23799292	23799294	2
Deletion	Chr8	26805478	26805482	4
Deletion	Chr2	31068314	31068315	1	LOC_Os02g50840
Deletion	Chr4	33646953	33646961	8	LOC_Os04g56440

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	446581	446582	2
Insertion	Chr2	4670476	4670476	1
Insertion	Chr4	2359340	2359341	2
Insertion	Chr4	29377951	29377952	2
Insertion	Chr5	12214362	12214365	4
Insertion	Chr6	16133254	16133254	1	LOC_Os06g28360

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1006447	1064611	LOC_Os05g02790
Inversion	Chr5	1006449	1064613	LOC_Os05g02790
Inversion	Chr1	42867394	42983495	LOC_Os01g74200
Inversion	Chr1	42867399	42983512	LOC_Os01g74200

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2264645	Chr2	35616841
Translocation	Chr8	2725187	Chr6	25806541	2
Translocation	Chr10	7831128	Chr2	17726454	2
Translocation	Chr10	10473076	Chr1	18784334
Translocation	Chr10	13192235	Chr8	18078115	LOC_Os08g29490
Translocation	Chr8	14645205	Chr4	3954961	LOC_Os08g24260
Translocation	Chr3	14993935	Chr2	24252965	LOC_Os03g26200
Translocation	Chr3	18216929	Chr1	9105547	LOC_Os03g31839
Translocation	Chr12	20331815	Chr8	17926417	2
Translocation	Chr11	23930971	Chr2	20283956
Translocation	Chr11	23930982	Chr2	20282905
Translocation	Chr6	25519339	Chr2	26045500
Translocation	Chr6	25520580	Chr2	26045496
Translocation	Chr11	27569079	Chr5	16490291

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