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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19529843	G-A	HET
SBS	Chr1	38440229	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66170
SBS	Chr1	5151144	C-T	HET
SBS	Chr10	12457294	G-A	HET
SBS	Chr10	15215664	G-C	HET
SBS	Chr10	15258442	C-T	HET
SBS	Chr10	6914240	G-T	HET
SBS	Chr11	14133465	A-G	Homo
SBS	Chr3	10705961	C-A	HET
SBS	Chr3	13697161	G-A	HET
SBS	Chr3	14653853	G-T	HET
SBS	Chr3	18699629	G-C	HET
SBS	Chr3	32517871	G-T	HET
SBS	Chr3	32517872	A-T	HET
SBS	Chr4	14034374	A-C	HET
SBS	Chr4	18237806	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g30520
SBS	Chr4	23382527	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39290
SBS	Chr4	28465448	G-T	HET
SBS	Chr4	8051478	A-T	HET
SBS	Chr4	8051479	G-T	HET
SBS	Chr4	9779073	G-A	HET
SBS	Chr5	10191703	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17720
SBS	Chr5	3597431	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g06870
SBS	Chr5	3597432	G-T	HET
SBS	Chr5	4626591	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g08480
SBS	Chr6	15696573	A-G	HET
SBS	Chr6	4366992	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g08730
SBS	Chr6	9246517	G-A	HET
SBS	Chr7	11360508	G-A	Homo
SBS	Chr7	9714029	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g16560
SBS	Chr8	22884298	T-A	Homo
SBS	Chr8	25577210	C-T	HET
SBS	Chr8	27881320	A-G	HET
SBS	Chr8	27908516	C-T	Homo
SBS	Chr9	3655521	C-T	HET

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	352909	352925	16	LOC_Os02g01610
Deletion	Chr3	1578883	1578886	3
Deletion	Chr11	3506611	3506617	6
Deletion	Chr8	6622070	6622087	17	LOC_Os08g11260
Deletion	Chr8	7220970	7220973	3	LOC_Os08g12270
Deletion	Chr11	8157508	8157513	5	LOC_Os11g14520
Deletion	Chr4	8431930	8431933	3
Deletion	Chr11	8996035	8996043	8
Deletion	Chr5	11099651	11099658	7
Deletion	Chr6	12972061	12972064	3
Deletion	Chr4	15198001	15238000	39999	3
Deletion	Chr4	16735243	16735246	3
Deletion	Chr10	17713236	17713245	9
Deletion	Chr2	21125484	21125493	9
Deletion	Chr7	21746525	21746547	22
Deletion	Chr2	23485754	23485770	16	LOC_Os02g38840
Deletion	Chr8	27003594	27003595	1
Deletion	Chr8	27021720	27021722	2
Deletion	Chr1	27635245	27635261	16
Deletion	Chr1	29918763	29918776	13

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	3356709	3356710	2
Insertion	Chr2	30175401	30175405	5
Insertion	Chr2	30195149	30195152	4
Insertion	Chr6	6999300	6999777	478
Insertion	Chr7	11460076	11460076	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8357745	8406908	2
Inversion	Chr4	8357786	8406926	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	599694	Chr3	27088089
Translocation	Chr5	3413243	Chr4	8192803	2
Translocation	Chr5	3413259	Chr4	16461922	LOC_Os05g06610
Translocation	Chr8	9744458	Chr3	16641701
Translocation	Chr8	17299160	Chr4	18885956	LOC_Os08g28350
Translocation	Chr10	21613328	Chr1	36375737	LOC_Os10g40324
Translocation	Chr10	21613396	Chr1	36374190	LOC_Os10g40324
Translocation	Chr6	25742035	Chr1	36374191	LOC_Os06g42824
Translocation	Chr8	28341722	Chr4	16461960	LOC_Os08g45130

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