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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14203261	G-C	Homo
SBS	Chr1	17168052	G-A	Homo	STOP_GAINED	LOC_Os01g31390
SBS	Chr1	26431631	T-A	HET
SBS	Chr10	10209304	A-T	HET
SBS	Chr10	10209305	T-G	HET
SBS	Chr10	7883407	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g15060
SBS	Chr11	12935382	G-A	HET
SBS	Chr11	14183016	G-A	HET
SBS	Chr11	17349851	G-A	HET
SBS	Chr11	17349852	C-A	HET
SBS	Chr11	20734722	C-G	HET
SBS	Chr11	20811322	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35510
SBS	Chr11	22361013	G-C	HET
SBS	Chr11	25588704	C-T	HET
SBS	Chr11	26880260	A-G	HET
SBS	Chr11	28128450	T-C	HET
SBS	Chr12	10076294	C-T	HET
SBS	Chr12	10571227	C-T	HET
SBS	Chr12	19337855	T-G	HET
SBS	Chr2	14327844	T-A	HET
SBS	Chr2	30018839	T-C	HET
SBS	Chr2	8639469	C-G	HET
SBS	Chr3	18026476	G-A	HET
SBS	Chr3	8947447	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g16220
SBS	Chr4	25066811	T-A	Homo
SBS	Chr4	34660963	A-T	Homo
SBS	Chr5	10455384	T-C	HET
SBS	Chr5	22446466	T-A	HET
SBS	Chr6	8720136	T-A	HET
SBS	Chr6	9907388	C-T	HET
SBS	Chr7	12310432	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g22000
SBS	Chr8	7685490	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g12920

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1815871	1815880	9
Deletion	Chr7	2545734	2545748	14
Deletion	Chr9	4127126	4127127	1
Deletion	Chr9	7215290	7215296	6
Deletion	Chr12	11596921	11596930	9
Deletion	Chr7	12175990	12175991	1
Deletion	Chr1	13623001	13752000	128999	21
Deletion	Chr2	15910190	15910191	1
Deletion	Chr6	17031520	17031521	1
Deletion	Chr3	21204873	21204884	11
Deletion	Chr9	21286028	21286030	2
Deletion	Chr8	21464189	21464192	3
Deletion	Chr5	21991208	21991213	5	LOC_Os05g37580
Deletion	Chr4	23226879	23226884	5	LOC_Os04g39080
Deletion	Chr5	24163512	24163526	14
Deletion	Chr3	24368883	24368894	11
Deletion	Chr11	27273175	27273188	13	LOC_Os11g45060
Deletion	Chr4	28519263	28519266	3
Deletion	Chr2	31627185	31627186	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	34123379	34123379	1
Insertion	Chr7	15963306	15963307	2
Insertion	Chr7	2973530	2973530	1
Insertion	Chr8	2824391	2824391	1	LOC_Os08g05360
Insertion	Chr9	14643260	14643260	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2896854	3471115	LOC_Os12g07080
Inversion	Chr6	12350898	12471040
Inversion	Chr9	17468457	17468880	LOC_Os09g28740
Inversion	Chr9	17468487	17468888	LOC_Os09g28740
Inversion	Chr1	25658373	26443715	LOC_Os01g45210
Inversion	Chr1	26330585	26443642
Inversion	Chr3	27553483	27971347	2
Inversion	Chr3	27553486	27971356	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2163974	Chr1	37409969
Translocation	Chr12	3471105	Chr10	18402398	2
Translocation	Chr2	8684415	Chr1	16530685	LOC_Os01g29488
Translocation	Chr3	10134117	Chr1	7229198
Translocation	Chr3	10134125	Chr2	19415633	LOC_Os02g32690
Translocation	Chr8	16464991	Chr7	13467804
Translocation	Chr11	17890572	Chr2	8032374	LOC_Os11g30720

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