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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12214672	A-G	HET
SBS	Chr1	17147110	T-C	HET	SPLICE_SITE_DONOR	LOC_Os01g31350
SBS	Chr1	34305972	C-T	HET
SBS	Chr1	35346361	T-A	HET
SBS	Chr10	12213495	G-A	Homo
SBS	Chr10	17926443	G-A	HET
SBS	Chr10	20268392	A-G	Homo
SBS	Chr12	12217741	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21730
SBS	Chr12	9957165	G-A	Homo
SBS	Chr2	1402551	C-A	HET
SBS	Chr2	34566539	A-T	HET
SBS	Chr2	35218670	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g57470
SBS	Chr3	13502297	G-A	HET
SBS	Chr3	2445288	G-A	HET
SBS	Chr3	2684927	T-C	HET
SBS	Chr3	28940383	A-G	Homo
SBS	Chr3	33506544	T-A	HET
SBS	Chr3	35162272	G-A	Homo
SBS	Chr3	8531227	C-T	HET
SBS	Chr4	21253430	G-A	Homo
SBS	Chr4	2141411	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04490
SBS	Chr4	25236936	G-A	Homo
SBS	Chr4	7238808	G-A	HET
SBS	Chr5	12990817	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g22870
SBS	Chr5	3266534	C-T	HET
SBS	Chr6	16124596	C-T	HET
SBS	Chr6	17549460	C-T	HET
SBS	Chr6	23081267	A-T	Homo
SBS	Chr6	27189136	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g44950
SBS	Chr7	17505771	T-C	Homo
SBS	Chr7	21025673	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35100
SBS	Chr8	1816990	G-A	Homo
SBS	Chr9	4772039	G-C	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1739254	1739257	3	LOC_Os01g04010
Deletion	Chr4	3350476	3350499	23
Deletion	Chr8	6522001	6557000	34999	7
Deletion	Chr8	6973838	6973839	1
Deletion	Chr4	13224520	13224540	20	LOC_Os04g23220
Deletion	Chr7	14428494	14428496	2
Deletion	Chr7	16367360	16367362	2
Deletion	Chr8	17086526	17086527	1
Deletion	Chr6	17212213	17212218	5	LOC_Os06g29880
Deletion	Chr5	18215725	18215790	65	LOC_Os05g31340
Deletion	Chr5	18596001	18851000	254999	39
Deletion	Chr4	19642777	19642780	3
Deletion	Chr6	22433238	22433239	1
Deletion	Chr7	23368395	23368396	1
Deletion	Chr1	24662001	24687000	24999	2
Deletion	Chr6	27189540	27189544	4	LOC_Os06g44950
Deletion	Chr7	27268005	27268006	1
Deletion	Chr3	29123880	29123884	4
Deletion	Chr6	30582146	30582153	7
Deletion	Chr3	35281954	35281956	2
Deletion	Chr1	36222809	36222813	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14535519	14535519	1
Insertion	Chr10	7159842	7159881	40	LOC_Os10g12808
Insertion	Chr5	12037281	12037281	1

No Inversion

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3491691	Chr1	6530423	2
Translocation	Chr5	3491700	Chr1	6531570	2
Translocation	Chr9	5579344	Chr1	949480	2
Translocation	Chr8	5998195	Chr1	8158813	LOC_Os08g10300
Translocation	Chr8	5998217	Chr1	8120829	LOC_Os08g10300
Translocation	Chr5	7084480	Chr1	5485848	2
Translocation	Chr7	7127625	Chr5	7084398	LOC_Os05g12320
Translocation	Chr4	11225818	Chr1	13093208	LOC_Os01g23310
Translocation	Chr7	13236653	Chr5	9247535	LOC_Os07g23440
Translocation	Chr9	20546969	Chr6	23626448	LOC_Os09g35720
Translocation	Chr6	21361859	Chr1	18784278
Translocation	Chr3	25386275	Chr1	531828
Translocation	Chr7	26712272	Chr4	33521052

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