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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15264281	A-G	Homo
SBS	Chr1	17464181	C-A	Homo
SBS	Chr1	22851458	C-G	HET
SBS	Chr1	29542577	G-A	Homo
SBS	Chr1	34919998	G-C	HET
SBS	Chr1	36083293	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g62350
SBS	Chr1	39328985	C-T	HET
SBS	Chr1	9208525	G-A	Homo
SBS	Chr11	18038151	G-C	Homo
SBS	Chr12	12766090	C-T	Homo
SBS	Chr12	22261786	G-C	Homo
SBS	Chr12	2488836	A-G	Homo
SBS	Chr2	23358219	G-A	Homo
SBS	Chr2	6579241	T-C	Homo
SBS	Chr3	19220895	A-G	Homo
SBS	Chr3	28218748	C-A	Homo
SBS	Chr3	32893619	G-C	HET
SBS	Chr3	34478219	G-C	HET
SBS	Chr3	34478220	C-A	HET
SBS	Chr4	15957041	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g26980
SBS	Chr4	17270175	G-A	Homo
SBS	Chr4	34838422	C-T	Homo
SBS	Chr4	8058294	A-G	Homo
SBS	Chr5	6248022	C-T	HET
SBS	Chr5	6949614	C-T	HET
SBS	Chr5	7805007	T-C	HET
SBS	Chr8	12484542	C-G	Homo
SBS	Chr8	2985302	C-T	HET
SBS	Chr9	14129024	C-T	HET
SBS	Chr9	2002675	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03920
SBS	Chr9	2002676	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03920
SBS	Chr9	21083296	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36550

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1934001	1957000	22999	7
Deletion	Chr7	2009001	2024000	14999	2
Deletion	Chr1	3284166	3284167	1	LOC_Os01g06920
Deletion	Chr5	7269001	7306000	36999	7
Deletion	Chr8	8120030	8120032	2
Deletion	Chr12	8491772	8491838	66
Deletion	Chr4	9824713	9824714	1	LOC_Os04g17880
Deletion	Chr12	10987298	10987300	2
Deletion	Chr12	12639019	12639020	1	LOC_Os12g22380
Deletion	Chr10	15485829	15485831	2
Deletion	Chr6	17069295	17069319	24
Deletion	Chr11	20913259	20913261	2
Deletion	Chr11	22955915	22955916	1
Deletion	Chr1	23931268	23931281	13
Deletion	Chr12	24664999	24665001	2
Deletion	Chr3	28340513	28340520	7

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	21612212	21612219	8
Insertion	Chr11	19169291	19169291	1
Insertion	Chr12	22275126	22275126	1
Insertion	Chr2	20620935	20620936	2
Insertion	Chr3	26568495	26568495	1	LOC_Os03g46980
Insertion	Chr5	12214445	12214448	4
Insertion	Chr6	20152409	20152428	20
Insertion	Chr7	28604181	28604181	1
Insertion	Chr7	4843878	4843878	1	LOC_Os07g09240
Insertion	Chr8	17877315	17877315	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1937707	2152116
Inversion	Chr7	2027401	2152124
Inversion	Chr5	7269345	7310477	2
Inversion	Chr4	17079988	17869576
Inversion	Chr2	24997362	24997602

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2171228	Chr2	10775862
Translocation	Chr12	2399364	Chr6	1276278	2
Translocation	Chr12	3105425	Chr3	25259142	LOC_Os12g06464
Translocation	Chr12	9802432	Chr1	530979
Translocation	Chr8	18745849	Chr3	18929781
Translocation	Chr8	24983081	Chr4	31648224	LOC_Os04g53130
Translocation	Chr12	25370427	Chr8	15270537

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