Search Results
| Mutant Information |
|---|
| Mutant Name | FN3999-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3999-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 12
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30295316 | C-T | HET | ||
| SBS | Chr1 | 38701690 | G-A | HET | ||
| SBS | Chr2 | 294985 | A-T | Homo | ||
| SBS | Chr4 | 1787471 | C-T | Homo | ||
| SBS | Chr5 | 7220292 | T-G | Homo | ||
| SBS | Chr7 | 2716592 | A-G | Homo | ||
| SBS | Chr7 | 8510452 | C-T | HET | ||
| SBS | Chr8 | 1433451 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g03130 |
| SBS | Chr8 | 2596687 | C-T | Homo | ||
| SBS | Chr9 | 4091276 | C-T | HET | ||
| SBS | Chr9 | 7260586 | T-C | Homo | ||
| SBS | Chr11 | 2200835 | A-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 3792001 | 4001000 | 208999 | 22 |
| Deletion | Chr12 | 4568127 | 4568128 | 1 | |
| Deletion | Chr7 | 6674001 | 6752000 | 77999 | 9 |
| Deletion | Chr12 | 7708596 | 7708597 | 1 | |
| Deletion | Chr7 | 9800188 | 9800207 | 19 | LOC_Os07g16710 |
| Deletion | Chr8 | 10714676 | 10714677 | 1 | |
| Deletion | Chr5 | 14097629 | 14097630 | 1 | LOC_Os05g24380 |
| Deletion | Chr10 | 19598047 | 19598051 | 4 | |
| Deletion | Chr3 | 20963001 | 21002000 | 38999 | 2 |
| Deletion | Chr7 | 22913798 | 22913799 | 1 | |
| Deletion | Chr7 | 23806001 | 23825000 | 18999 | 5 |
| Deletion | Chr7 | 26050219 | 26050221 | 2 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 21924017 | 21924019 | 3 | LOC_Os03g39450 |
| Insertion | Chr2 | 32483158 | 32483158 | 1 | |
| Insertion | Chr7 | 12283617 | 12283620 | 4 | |
| Insertion | Chr8 | 11542155 | 11542155 | 1 | |
| Insertion | Chr8 | 16900172 | 16900175 | 4 | |
| Insertion | Chr10 | 14378282 | 14378285 | 4 | LOC_Os10g27260 |
| Insertion | Chr12 | 21982395 | 21982395 | 1 | |
| Insertion | Chr3 | 20533415 | 20533417 | 3 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 8052477 | 8804282 | |
| Inversion | Chr10 | 9140649 | 9693804 | LOC_Os10g18026 |
| Inversion | Chr10 | 9493247 | 9692564 | |
| Inversion | Chr10 | 12195640 | 12216410 | LOC_Os10g23820 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4464576 | Chr8 | 25261296 | LOC_Os08g39870 |
| Translocation | Chr10 | 9140647 | Chr8 | 696488 | LOC_Os10g18026 |
| Translocation | Chr10 | 9493511 | Chr8 | 696037 | |
| Translocation | Chr7 | 9894189 | Chr3 | 13495236 | LOC_Os03g23800 |
| Translocation | Chr11 | 13434998 | Chr2 | 8032395 | |
| Translocation | Chr8 | 16637876 | Chr6 | 1224653 | |
| Translocation | Chr11 | 16724443 | Chr4 | 13537364 | |
| Translocation | Chr9 | 19008881 | Chr4 | 11551106 | |
| Translocation | Chr5 | 20638102 | Chr1 | 20150131 | LOC_Os05g34780 |
| Translocation | Chr12 | 22666475 | Chr6 | 7316864 | |
| Translocation | Chr7 | 25340100 | Chr3 | 31170075 |