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| Mutant Information |
|---|
| Mutant Name | FN4001-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4001-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29807341 | G-C | HET | ||
| SBS | Chr10 | 15505961 | T-A | HET | ||
| SBS | Chr11 | 11940188 | G-T | HET | ||
| SBS | Chr11 | 26501031 | T-C | HET | ||
| SBS | Chr11 | 27303814 | G-A | HET | ||
| SBS | Chr11 | 4177102 | T-C | Homo | ||
| SBS | Chr11 | 7876076 | T-A | HET | ||
| SBS | Chr12 | 15249413 | G-A | HET | ||
| SBS | Chr12 | 17297408 | T-G | HET | ||
| SBS | Chr2 | 1211844 | G-T | HET | ||
| SBS | Chr2 | 30304496 | T-A | HET | ||
| SBS | Chr3 | 10198444 | A-T | Homo | ||
| SBS | Chr3 | 11017645 | A-T | HET | ||
| SBS | Chr3 | 12167026 | T-C | HET | ||
| SBS | Chr3 | 23385804 | G-A | HET | ||
| SBS | Chr3 | 27019591 | A-T | Homo | ||
| SBS | Chr3 | 4499841 | A-T | Homo | ||
| SBS | Chr4 | 13913122 | C-G | HET | ||
| SBS | Chr4 | 19711090 | G-A | HET | ||
| SBS | Chr4 | 24699676 | C-T | Homo | ||
| SBS | Chr4 | 4714255 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g08680 |
| SBS | Chr4 | 4801945 | T-C | HET | ||
| SBS | Chr5 | 14449526 | G-A | Homo | ||
| SBS | Chr6 | 90608 | G-A | HET | ||
| SBS | Chr7 | 12557150 | G-A | HET | ||
| SBS | Chr7 | 14024109 | C-T | HET | ||
| SBS | Chr7 | 9956931 | G-A | HET | ||
| SBS | Chr8 | 18372549 | C-T | HET | ||
| SBS | Chr9 | 13203413 | A-C | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 983508 | 983510 | 2 | |
| Deletion | Chr9 | 1433421 | 1433422 | 1 | LOC_Os09g03040 |
| Deletion | Chr2 | 5097571 | 5097573 | 2 | |
| Deletion | Chr2 | 6018493 | 6018498 | 5 | LOC_Os02g11700 |
| Deletion | Chr3 | 8742176 | 8742181 | 5 | |
| Deletion | Chr7 | 9597295 | 9597333 | 38 | LOC_Os07g16400 |
| Deletion | Chr2 | 14844001 | 14879000 | 34999 | 6 |
| Deletion | Chr4 | 20145685 | 20145688 | 3 | |
| Deletion | Chr5 | 21863696 | 21863697 | 1 | |
| Deletion | Chr6 | 25337001 | 25344000 | 6999 | 2 |
| Deletion | Chr11 | 26728041 | 26728043 | 2 | |
| Deletion | Chr3 | 34477201 | 34477202 | 1 | LOC_Os03g60650 |
| Deletion | Chr2 | 35569805 | 35569808 | 3 | LOC_Os02g58120 |
Insertions: 6
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 11049768 | 11078826 | 2 |
| Inversion | Chr3 | 11049773 | 11078872 | 2 |
| Inversion | Chr4 | 19171123 | 19908084 | LOC_Os04g32010 |
| Inversion | Chr4 | 19171126 | 19908110 | LOC_Os04g32010 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 7125838 | Chr5 | 8822400 | 2 |
| Translocation | Chr8 | 10913923 | Chr5 | 9160328 | |
| Translocation | Chr12 | 11201131 | Chr8 | 2999198 | LOC_Os12g19304 |
| Translocation | Chr8 | 12577665 | Chr4 | 2200028 | LOC_Os04g04600 |
| Translocation | Chr8 | 22301720 | Chr6 | 13618918 | |
| Translocation | Chr3 | 31652160 | Chr1 | 22965030 |