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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21786480	G-A	HET
SBS	Chr10	12241936	T-G	HET
SBS	Chr10	21767175	C-G	Homo
SBS	Chr10	9559576	G-T	Homo
SBS	Chr10	9559577	G-T	Homo
SBS	Chr11	11477660	G-A	HET
SBS	Chr11	23690217	C-T	Homo
SBS	Chr11	23768054	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g39870
SBS	Chr12	10619740	G-T	Homo
SBS	Chr12	15965546	C-G	Homo
SBS	Chr2	16159338	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g27420
SBS	Chr3	13009163	T-A	HET
SBS	Chr3	18016682	G-A	Homo
SBS	Chr4	17239576	G-C	HET
SBS	Chr5	21097492	A-T	HET
SBS	Chr5	23004072	G-T	HET
SBS	Chr5	23445302	C-A	HET
SBS	Chr5	26137852	C-T	Homo	STOP_GAINED	LOC_Os05g44960
SBS	Chr5	3380647	G-T	Homo
SBS	Chr5	3876777	C-T	HET
SBS	Chr6	24473194	G-T	HET
SBS	Chr6	24473196	A-C	HET
SBS	Chr7	14056065	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24700
SBS	Chr8	6745676	G-A	HET
SBS	Chr9	20901199	C-T	HET
SBS	Chr9	5495450	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	118101	118109	8
Deletion	Chr5	3492712	3492718	6
Deletion	Chr10	9740804	9740809	5	LOC_Os10g19130
Deletion	Chr4	10893001	10899000	5999	2
Deletion	Chr7	11300559	11300586	27
Deletion	Chr2	14522161	14522162	1	LOC_Os02g25040
Deletion	Chr9	16198267	16198284	17
Deletion	Chr1	17975954	17975973	19
Deletion	Chr3	19564324	19564479	155
Deletion	Chr9	20568938	20568944	6	LOC_Os09g35760
Deletion	Chr11	21483001	21495000	11999	4
Deletion	Chr5	22352001	22414000	61999	11
Deletion	Chr5	22425001	22471000	45999	10
Deletion	Chr7	28750318	28750320	2
Deletion	Chr4	29551232	29551348	116

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32723184	32723184	1
Insertion	Chr10	2580103	2580107	5
Insertion	Chr10	752229	752229	1	LOC_Os10g02190
Insertion	Chr3	35098255	35098255	1	LOC_Os03g61910
Insertion	Chr4	7452431	7452431	1
Insertion	Chr9	15428300	15428303	4
Insertion	Chr9	5748486	5748486	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1089311	1544437	LOC_Os12g03790
Inversion	Chr12	1089320	1544470	LOC_Os12g03790
Inversion	Chr11	21235834	21483541	LOC_Os11g36430
Inversion	Chr11	21235851	21495647	LOC_Os11g36460

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1216064	Chr5	23978957	2
Translocation	Chr10	2701186	Chr1	39381271	LOC_Os10g05470
Translocation	Chr7	3738673	Chr3	22228961
Translocation	Chr4	3844939	Chr3	13382505
Translocation	Chr5	5212063	Chr1	19483686	2
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr7	14009343	Chr6	21785316	LOC_Os07g24620
Translocation	Chr12	18707997	Chr1	22266837
Translocation	Chr12	24160557	Chr3	8413098	LOC_Os12g39250
Translocation	Chr11	28256119	Chr2	13043193	LOC_Os11g47030

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