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| Mutant Information |
|---|
| Mutant Name | FN4041-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4041-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1570593 | C-G | HET | ||
| SBS | Chr1 | 257789 | G-A | HET | ||
| SBS | Chr1 | 27502859 | T-C | HET | ||
| SBS | Chr1 | 33414909 | C-T | HET | ||
| SBS | Chr1 | 34988249 | G-A | Homo | ||
| SBS | Chr1 | 40315407 | G-C | HET | ||
| SBS | Chr10 | 13129237 | C-T | HET | ||
| SBS | Chr11 | 21558189 | A-G | HET | ||
| SBS | Chr11 | 2525469 | A-G | Homo | ||
| SBS | Chr11 | 4308487 | T-C | Homo | ||
| SBS | Chr12 | 4345055 | C-T | HET | ||
| SBS | Chr12 | 8413686 | G-T | HET | ||
| SBS | Chr2 | 5786139 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g10900 |
| SBS | Chr2 | 6192791 | T-C | HET | ||
| SBS | Chr3 | 13743458 | C-A | Homo | ||
| SBS | Chr3 | 3793284 | G-A | HET | ||
| SBS | Chr4 | 21214069 | G-A | HET | ||
| SBS | Chr4 | 21214071 | T-A | HET | ||
| SBS | Chr4 | 21243317 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g34960 |
| SBS | Chr4 | 23519536 | G-A | HET | ||
| SBS | Chr4 | 24425172 | C-T | Homo | ||
| SBS | Chr4 | 6933507 | G-A | Homo | ||
| SBS | Chr4 | 9276582 | T-C | Homo | ||
| SBS | Chr5 | 15774385 | C-T | HET | ||
| SBS | Chr5 | 18221760 | T-A | HET | ||
| SBS | Chr5 | 23391439 | C-G | HET | ||
| SBS | Chr5 | 27402347 | G-A | HET | ||
| SBS | Chr6 | 10286263 | G-A | HET | ||
| SBS | Chr6 | 7143962 | A-T | HET | ||
| SBS | Chr6 | 8735655 | G-T | Homo | ||
| SBS | Chr8 | 12265008 | G-C | Homo | ||
| SBS | Chr9 | 3912786 | G-A | HET | ||
| SBS | Chr9 | 4369231 | A-C | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 7888226 | 7888227 | 1 | |
| Deletion | Chr12 | 12465001 | 12725000 | 259999 | 40 |
| Deletion | Chr3 | 16956371 | 16956450 | 79 | |
| Deletion | Chr5 | 17701486 | 17701487 | 1 | LOC_Os05g30550 |
| Deletion | Chr11 | 23371576 | 23371577 | 1 | LOC_Os11g39250 |
| Deletion | Chr3 | 28124735 | 28124746 | 11 | |
| Deletion | Chr1 | 39474690 | 39474691 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 3205060 | 3205072 | 13 | |
| Insertion | Chr11 | 14447578 | 14447578 | 1 | |
| Insertion | Chr5 | 13988934 | 13988936 | 3 | |
| Insertion | Chr8 | 12039186 | 12039187 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 23269230 | 23419703 | LOC_Os02g38480 |
| Inversion | Chr2 | 23269248 | 23419706 | LOC_Os02g38480 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 2861073 | Chr1 | 17634409 | 2 |
| Translocation | Chr12 | 4136909 | Chr7 | 3304292 | |
| Translocation | Chr12 | 9610554 | Chr10 | 4824280 | |
| Translocation | Chr11 | 11831706 | Chr7 | 14037452 | LOC_Os07g24670 |
| Translocation | Chr10 | 12860090 | Chr2 | 16818187 | LOC_Os10g24980 |
| Translocation | Chr8 | 14737418 | Chr7 | 5214800 | |
| Translocation | Chr11 | 19859161 | Chr7 | 16610234 | LOC_Os11g33970 |
| Translocation | Chr12 | 23131699 | Chr7 | 4748495 |