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| Mutant Information |
|---|
| Mutant Name | FN4043-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4043-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8079092 | A-C | HET | ||
| SBS | Chr10 | 13397231 | C-A | HET | ||
| SBS | Chr10 | 3886173 | G-A | HET | ||
| SBS | Chr11 | 11573591 | G-A | HET | ||
| SBS | Chr12 | 18797343 | G-T | HET | ||
| SBS | Chr12 | 24465259 | T-A | HET | ||
| SBS | Chr12 | 25603846 | T-A | HET | ||
| SBS | Chr2 | 1073126 | A-G | HET | ||
| SBS | Chr2 | 14449446 | G-A | Homo | ||
| SBS | Chr2 | 16303942 | A-G | HET | ||
| SBS | Chr2 | 17303077 | G-T | HET | ||
| SBS | Chr2 | 17788519 | C-G | HET | ||
| SBS | Chr2 | 30959473 | A-G | Homo | ||
| SBS | Chr4 | 12909035 | T-G | Homo | ||
| SBS | Chr4 | 27920078 | A-T | Homo | ||
| SBS | Chr4 | 33135703 | G-A | Homo | ||
| SBS | Chr4 | 34342587 | G-A | HET | ||
| SBS | Chr4 | 9757830 | T-G | Homo | ||
| SBS | Chr4 | 9757833 | G-C | Homo | ||
| SBS | Chr5 | 17227409 | A-T | Homo | ||
| SBS | Chr5 | 7849542 | T-C | HET | ||
| SBS | Chr5 | 8272073 | T-C | HET | ||
| SBS | Chr6 | 28346821 | C-T | Homo | ||
| SBS | Chr8 | 20979695 | C-T | Homo | ||
| SBS | Chr8 | 23137805 | C-T | HET | ||
| SBS | Chr9 | 13779042 | C-G | HET | ||
| SBS | Chr9 | 17071614 | T-C | Homo | ||
| SBS | Chr9 | 22455912 | A-G | HET | ||
| SBS | Chr9 | 5567642 | G-C | HET | ||
| SBS | Chr9 | 5925545 | C-A | HET |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1532162 | 1532163 | 1 | |
| Deletion | Chr8 | 3495549 | 3495551 | 2 | |
| Deletion | Chr10 | 3865204 | 3865208 | 4 | |
| Deletion | Chr11 | 4179775 | 4179776 | 1 | |
| Deletion | Chr10 | 5206793 | 5206797 | 4 | |
| Deletion | Chr6 | 7031570 | 7031573 | 3 | LOC_Os06g12850 |
| Deletion | Chr5 | 7263194 | 7263195 | 1 | |
| Deletion | Chr12 | 7662695 | 7662697 | 2 | |
| Deletion | Chr3 | 8412776 | 8412777 | 1 | |
| Deletion | Chr1 | 9190285 | 9190309 | 24 | |
| Deletion | Chr8 | 11921330 | 11921337 | 7 | |
| Deletion | Chr9 | 13774895 | 13774897 | 2 | |
| Deletion | Chr2 | 18333103 | 18333105 | 2 | |
| Deletion | Chr1 | 19179402 | 19179406 | 4 | |
| Deletion | Chr2 | 19910001 | 19958000 | 47999 | 7 |
| Deletion | Chr1 | 20333574 | 20333575 | 1 | |
| Deletion | Chr8 | 20979177 | 20979182 | 5 | |
| Deletion | Chr2 | 21459461 | 21459462 | 1 | |
| Deletion | Chr6 | 22873914 | 22873916 | 2 | |
| Deletion | Chr4 | 27963533 | 27963546 | 13 | |
| Deletion | Chr4 | 30826370 | 30826389 | 19 | LOC_Os04g51950 |
| Deletion | Chr1 | 31398001 | 31445000 | 46999 | 9 |
| Deletion | Chr1 | 32311394 | 32311396 | 2 | LOC_Os01g56120 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 19937088 | 19937089 | 2 | |
| Insertion | Chr12 | 17835352 | 17835355 | 4 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 13541913 | 14488686 | LOC_Os01g24030 |
| Inversion | Chr1 | 13541933 | 14199973 | LOC_Os01g24030 |
| Inversion | Chr1 | 15926287 | 15966910 | 2 |
| Inversion | Chr2 | 19800386 | 19903788 | |
| Inversion | Chr2 | 19800390 | 19958806 | |
| Inversion | Chr4 | 20493803 | 20494700 |
No Translocation