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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15850010	A-T	HET	INTERGENIC
SBS	Chr1	15850011	G-T	HET	INTERGENIC
SBS	Chr1	28399913	C-T	HET	INTERGENIC
SBS	Chr2	3312474	G-A	HET	INTRON
SBS	Chr2	18351510	A-G	HET	INTRON
SBS	Chr2	18876068	C-A	HET	INTRON
SBS	Chr2	21575586	G-A	HET	INTERGENIC
SBS	Chr3	9429633	C-T	HOMO	INTERGENIC
SBS	Chr4	6287019	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11500
SBS	Chr6	987707	A-G	HET	INTERGENIC
SBS	Chr6	8337778	T-G	HET	INTERGENIC
SBS	Chr6	8338827	A-T	HET	INTERGENIC
SBS	Chr6	14749577	G-A	HET	INTRON
SBS	Chr6	25322197	C-G	HOMO	INTERGENIC
SBS	Chr7	4556916	C-T	HET	INTERGENIC
SBS	Chr7	18592889	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	26380188	G-C	HET	INTERGENIC
SBS	Chr7	29479561	C-T	HOMO	INTRON
SBS	Chr8	5894043	G-C	HET	SYNONYMOUS_CODING
SBS	Chr8	9385584	T-C	HET	INTRON
SBS	Chr9	15911523	G-A	HOMO	INTERGENIC
SBS	Chr10	6294588	A-C	HET	INTERGENIC
SBS	Chr10	8605251	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	7872054	T-C	HET	INTERGENIC
SBS	Chr11	8142189	T-C	HET	INTERGENIC
SBS	Chr11	11506565	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	17265683	A-G	HET	INTERGENIC
SBS	Chr12	12259471	A-C	HOMO	UTR_3_PRIME

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1292606	1388750	96144	13
Deletion	Chr2	1647309	1647310	1
Deletion	Chr11	1883491	1883506	15
Deletion	Chr6	3441001	3725000	284000	50
Deletion	Chr11	4381148	4381156	8	LOC_Os11g08314
Deletion	Chr8	4522464	4522470	6
Deletion	Chr6	8194013	8194014	1
Deletion	Chr4	8451286	8451287	1
Deletion	Chr1	10357849	10357850	1
Deletion	Chr2	10646883	10667757	20874	2
Deletion	Chr12	11290795	11290799	4
Deletion	Chr2	12127984	12127986	2	LOC_Os02g20560
Deletion	Chr3	12933507	12933508	1
Deletion	Chr12	13038512	13038531	19
Deletion	Chr1	16042001	16361000	319000	52
Deletion	Chr9	19313276	19313277	1
Deletion	Chr4	21791373	21791375	2
Deletion	Chr4	22403001	22458000	55000	10
Deletion	Chr4	22456194	22456209	15
Deletion	Chr6	24815468	24815481	13
Deletion	Chr5	27519576	27519577	1
Deletion	Chr3	34303123	34303125	2
Deletion	Chr3	35820059	35820065	6
Deletion	Chr1	40334988	40334989	1	LOC_Os01g69830

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	27268352	27268352	1
Insertion	Chr3	36012295	36012300	6
Insertion	Chr4	7360245	7360246	2
Insertion	Chr7	11319117	11319118	2
Insertion	Chr7	23386232	23386233	2
Insertion	Chr11	28835661	28835662	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5569597	5925281	2
Inversion	Chr11	5627946	11507304	LOC_Os11g10370

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1345267	Chr8	6074017	LOC_Os08g10360
Translocation	Chr2	5569593	Chr1	16361742	2

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