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| Mutant Information |
|---|
| Mutant Name | FN4066-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4066-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21442377 | G-A | Homo | ||
| SBS | Chr1 | 30340417 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g52740 |
| SBS | Chr1 | 32381389 | G-A | HET | ||
| SBS | Chr1 | 43185494 | C-T | HET | ||
| SBS | Chr10 | 19257694 | A-C | HET | ||
| SBS | Chr11 | 16531075 | G-A | HET | ||
| SBS | Chr11 | 3320032 | A-T | Homo | ||
| SBS | Chr11 | 3320033 | C-T | Homo | ||
| SBS | Chr12 | 4189904 | G-C | HET | ||
| SBS | Chr12 | 5481573 | A-T | HET | ||
| SBS | Chr2 | 17526731 | C-T | Homo | ||
| SBS | Chr2 | 20342157 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34040 |
| SBS | Chr2 | 33112546 | T-C | HET | ||
| SBS | Chr2 | 33112553 | A-G | HET | ||
| SBS | Chr3 | 11413443 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g20190 |
| SBS | Chr3 | 17763771 | G-A | HET | ||
| SBS | Chr4 | 10724103 | C-T | HET | ||
| SBS | Chr6 | 6318724 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g11880 |
| SBS | Chr7 | 16495532 | T-G | HET | ||
| SBS | Chr7 | 20104745 | C-T | HET | ||
| SBS | Chr9 | 12213769 | C-T | HET | ||
| SBS | Chr9 | 20120297 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g34090 |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 112233 | 112252 | 19 | LOC_Os09g01100 |
| Deletion | Chr12 | 712519 | 712532 | 13 | |
| Deletion | Chr11 | 3320091 | 3320120 | 29 | |
| Deletion | Chr4 | 3426001 | 3503000 | 76999 | 11 |
| Deletion | Chr1 | 4109505 | 4109507 | 2 | |
| Deletion | Chr10 | 4617001 | 4732000 | 114999 | 21 |
| Deletion | Chr1 | 9861711 | 9861714 | 3 | |
| Deletion | Chr3 | 13208300 | 13208313 | 13 | LOC_Os03g22850 |
| Deletion | Chr2 | 14237962 | 14237972 | 10 | LOC_Os02g24570 |
| Deletion | Chr8 | 15225735 | 15225743 | 8 | |
| Deletion | Chr5 | 27816315 | 27816316 | 1 | |
| Deletion | Chr3 | 35471223 | 35471231 | 8 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 7458562 | 7458568 | 7 | |
| Insertion | Chr3 | 30924280 | 30924505 | 226 | |
| Insertion | Chr5 | 9941976 | 9941976 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 2965140 | 3138645 | LOC_Os05g05910 |
| Inversion | Chr5 | 2965145 | 3138653 | LOC_Os05g05910 |
| Inversion | Chr10 | 4735316 | 5019050 | LOC_Os10g09280 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4416697 | Chr8 | 18415250 | LOC_Os08g29980 |
| Translocation | Chr12 | 7544467 | Chr7 | 15462258 | |
| Translocation | Chr7 | 11743547 | Chr5 | 19043121 | LOC_Os05g32560 |
| Translocation | Chr6 | 14917329 | Chr1 | 18037392 | |
| Translocation | Chr12 | 15191193 | Chr4 | 18885976 | |
| Translocation | Chr12 | 17128902 | Chr3 | 27794630 | |
| Translocation | Chr12 | 24333105 | Chr6 | 1179153 | |
| Translocation | Chr11 | 28168665 | Chr5 | 29598156 | LOC_Os05g51620 |
| Translocation | Chr3 | 32400349 | Chr1 | 39420088 | LOC_Os03g56890 |