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| Mutant Information |
|---|
| Mutant Name | FN4077-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4077-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14459945 | A-T | Homo | ||
| SBS | Chr1 | 26931290 | G-A | Homo | ||
| SBS | Chr1 | 28575831 | T-C | Homo | ||
| SBS | Chr1 | 28684554 | G-A | HET | ||
| SBS | Chr1 | 37594004 | C-T | HET | ||
| SBS | Chr1 | 42314039 | G-C | HET | ||
| SBS | Chr1 | 6944843 | A-T | HET | ||
| SBS | Chr1 | 6944844 | T-A | HET | ||
| SBS | Chr10 | 5117760 | G-T | Homo | ||
| SBS | Chr10 | 5117761 | C-G | Homo | ||
| SBS | Chr11 | 5306284 | C-T | Homo | ||
| SBS | Chr2 | 32030635 | C-T | Homo | ||
| SBS | Chr3 | 11869700 | T-C | HET | ||
| SBS | Chr3 | 25325290 | C-T | HET | ||
| SBS | Chr5 | 19835409 | G-A | HET | ||
| SBS | Chr5 | 28030717 | G-A | Homo | ||
| SBS | Chr6 | 11144550 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19570 |
| SBS | Chr7 | 24329270 | C-T | HET | ||
| SBS | Chr7 | 28607191 | T-C | HET | ||
| SBS | Chr8 | 13873004 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g23050 |
| SBS | Chr8 | 21060892 | A-C | Homo | ||
| SBS | Chr9 | 19232108 | T-C | HET | ||
| SBS | Chr9 | 8066354 | C-T | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 530228 | 530230 | 2 | |
| Deletion | Chr3 | 2709331 | 2709332 | 1 | |
| Deletion | Chr11 | 8121613 | 8121661 | 48 | LOC_Os11g14460 |
| Deletion | Chr9 | 11141568 | 11141583 | 15 | |
| Deletion | Chr7 | 12938685 | 12938687 | 2 | LOC_Os07g22960 |
| Deletion | Chr7 | 15894650 | 15894651 | 1 | |
| Deletion | Chr5 | 15961755 | 15961756 | 1 | LOC_Os05g27450 |
| Deletion | Chr7 | 16379001 | 16483000 | 103999 | 14 |
| Deletion | Chr4 | 17592734 | 17592735 | 1 | |
| Deletion | Chr11 | 18606541 | 18606546 | 5 | |
| Deletion | Chr2 | 19010227 | 19010228 | 1 | LOC_Os02g32180 |
| Deletion | Chr8 | 27224000 | 27224012 | 12 | |
| Deletion | Chr3 | 31983429 | 31983438 | 9 | |
| Deletion | Chr4 | 32922332 | 32922345 | 13 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 23803445 | 23803447 | 3 | |
| Insertion | Chr2 | 1506963 | 1506963 | 1 | |
| Insertion | Chr4 | 12162934 | 12162937 | 4 | |
| Insertion | Chr7 | 232219 | 232219 | 1 | |
| Insertion | Chr8 | 23461108 | 23461140 | 33 | LOC_Os08g37120 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 13655319 | 14515995 | |
| Inversion | Chr1 | 13655331 | 14460388 | LOC_Os01g25510 |
| Inversion | Chr7 | 15813871 | 16378727 | 2 |
| Inversion | Chr7 | 15813877 | 16515393 | 2 |
| Inversion | Chr11 | 18609277 | 19143657 | 2 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4788930 | Chr1 | 16147142 | LOC_Os01g28830 |
| Translocation | Chr7 | 6002713 | Chr4 | 32327160 | LOC_Os07g10950 |
| Translocation | Chr9 | 6936772 | Chr1 | 3000521 | LOC_Os01g06310 |
| Translocation | Chr5 | 10270461 | Chr1 | 6257231 | |
| Translocation | Chr5 | 12908601 | Chr1 | 23088558 | LOC_Os01g40830 |
| Translocation | Chr5 | 12910185 | Chr1 | 20403988 | |
| Translocation | Chr7 | 19416460 | Chr1 | 34821287 | |
| Translocation | Chr11 | 22690117 | Chr3 | 11914698 | |
| Translocation | Chr6 | 23516344 | Chr5 | 5212207 | LOC_Os05g09330 |