Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	20602291	G-A	Homo
SBS	Chr10	6426461	A-G	HET
SBS	Chr11	16229236	G-T	HET
SBS	Chr11	17285958	C-T	HET
SBS	Chr11	19385805	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32810
SBS	Chr11	20783228	T-A	Homo
SBS	Chr11	4122867	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07950
SBS	Chr11	5529266	T-A	HET
SBS	Chr11	8327685	C-A	Homo
SBS	Chr2	27517627	G-C	Homo
SBS	Chr3	14005514	T-C	Homo
SBS	Chr3	33150749	G-C	HET
SBS	Chr3	34107322	C-A	HET
SBS	Chr3	7129959	C-T	Homo
SBS	Chr3	9299635	A-G	HET
SBS	Chr4	12677895	G-A	Homo
SBS	Chr4	195731	A-T	HET
SBS	Chr4	21680455	A-T	Homo
SBS	Chr4	21699147	G-A	Homo
SBS	Chr4	27441010	G-T	Homo
SBS	Chr4	30425406	A-C	HET
SBS	Chr4	34999709	A-G	HET
SBS	Chr4	5830880	G-A	Homo
SBS	Chr4	6001900	A-G	Homo
SBS	Chr5	17074159	T-G	Homo
SBS	Chr5	5345615	G-T	Homo
SBS	Chr6	2670685	A-T	HET
SBS	Chr7	26180484	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g43750
SBS	Chr7	2907200	T-C	HET
SBS	Chr8	11834601	C-G	HET
SBS	Chr8	8359394	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13950

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1562347	1562355	8
Deletion	Chr12	6792488	6792489	1
Deletion	Chr8	8743049	8743052	3	LOC_Os08g14540
Deletion	Chr2	9353291	9353314	23
Deletion	Chr10	16334001	16475000	140999	19
Deletion	Chr8	21311001	21416000	104999	15
Deletion	Chr5	21606051	21606053	2
Deletion	Chr4	28148801	28148803	2
Deletion	Chr3	31963001	32196000	232999	38
Deletion	Chr1	36735198	36735200	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	12472073	12472073	1
Insertion	Chr12	11689811	11689815	5
Insertion	Chr12	20680992	20680994	3
Insertion	Chr2	23462455	23462455	1
Insertion	Chr2	32483158	32483158	1
Insertion	Chr3	30788229	30788230	2
Insertion	Chr5	7530921	7530922	2	LOC_Os05g13570
Insertion	Chr8	3232481	3232483	3

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2309454	2605967
Inversion	Chr2	2309458	2605969
Inversion	Chr4	17079985	17869576
Inversion	Chr10	17343583	17678314
Inversion	Chr10	17437787	17677497	2
Inversion	Chr4	27761496	27761819
Inversion	Chr5	28313623	29217448	LOC_Os05g50910
Inversion	Chr5	28313628	29217465	LOC_Os05g50910
Inversion	Chr3	31155632	31387149	LOC_Os03g55140
Inversion	Chr3	31173915	31387136	2
Inversion	Chr1	35957355	36128262	LOC_Os01g62410
Inversion	Chr1	35957361	36128263	LOC_Os01g62410

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6823153	Chr4	27350777	LOC_Os06g12590
Translocation	Chr9	9574146	Chr1	6539000
Translocation	Chr3	16449147	Chr2	28715218
Translocation	Chr3	29761887	Chr1	9052690

Main menu