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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10353457	A-G	Homo
SBS	Chr1	16090866	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g28740
SBS	Chr1	22806235	A-T	Homo
SBS	Chr1	27117306	C-A	Homo
SBS	Chr1	5995170	C-T	Homo
SBS	Chr10	1528228	T-G	HET
SBS	Chr11	10003604	C-T	HET
SBS	Chr11	13443580	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23770
SBS	Chr11	15422684	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26850
SBS	Chr11	18013157	C-T	HET
SBS	Chr2	15052777	C-T	HET
SBS	Chr2	28676300	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g46962
SBS	Chr2	9350678	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16400
SBS	Chr3	18024623	A-G	HET
SBS	Chr3	7427741	G-A	HET
SBS	Chr4	34407048	C-T	HET
SBS	Chr4	34407049	C-T	HET	STOP_GAINED	LOC_Os04g57770
SBS	Chr4	7704066	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g13810
SBS	Chr5	5108442	A-G	Homo
SBS	Chr6	28012538	C-T	HET
SBS	Chr6	3585449	T-C	HET
SBS	Chr7	18847886	G-A	HET
SBS	Chr7	1891137	C-T	HET
SBS	Chr7	25429851	C-T	Homo
SBS	Chr8	12522410	C-T	HET
SBS	Chr8	12522411	T-A	HET
SBS	Chr9	13076612	G-T	HET
SBS	Chr9	20928654	G-T	HET
SBS	Chr9	4886230	A-G	Homo

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1220827	1220828	1	LOC_Os10g02960
Deletion	Chr4	3350476	3350499	23
Deletion	Chr11	3958092	3958093	1
Deletion	Chr11	4780578	4780581	3	LOC_Os11g09000
Deletion	Chr10	8253274	8253275	1
Deletion	Chr12	9384155	9384156	1	LOC_Os12g16390
Deletion	Chr11	9701675	9701677	2
Deletion	Chr9	10162636	10162637	1
Deletion	Chr2	28160124	28160129	5
Deletion	Chr1	29009576	29009601	25
Deletion	Chr1	33015685	33015686	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29862972	29862972	1
Insertion	Chr1	35934243	35934247	5
Insertion	Chr1	41615973	41615973	1
Insertion	Chr10	1675732	1675768	37
Insertion	Chr12	11336483	11336483	1
Insertion	Chr12	17115290	17115290	1
Insertion	Chr3	23674589	23674589	1
Insertion	Chr3	24130566	24130569	4
Insertion	Chr5	13988934	13988936	3
Insertion	Chr5	20220797	20220797	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12941791	13702453	LOC_Os09g21420
Inversion	Chr9	13620420	13702444
Inversion	Chr9	13620442	14402266
Inversion	Chr4	32929509	33065912	LOC_Os04g55555

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6733738	Chr2	2417820
Translocation	Chr3	6786991	Chr1	14175836	LOC_Os03g12720
Translocation	Chr12	7125610	Chr3	4034743
Translocation	Chr9	7836052	Chr5	10185767
Translocation	Chr6	9473710	Chr3	16475641	LOC_Os03g29020
Translocation	Chr8	11025045	Chr5	986687	LOC_Os05g02740
Translocation	Chr12	11832536	Chr3	15245441	2
Translocation	Chr6	14031752	Chr3	12503655
Translocation	Chr11	16669842	Chr7	28487475
Translocation	Chr10	21248873	Chr5	1803497
Translocation	Chr7	26201279	Chr1	36918382	2

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