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Mutant Information

Mutant Name	FN4099-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4099-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12036761	C-T	HET
SBS	Chr1	12098997	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g21600
SBS	Chr10	17072859	G-A	Homo
SBS	Chr11	23011420	T-C	HET
SBS	Chr12	6957263	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g12620
SBS	Chr2	10832255	T-C	HET
SBS	Chr2	12355742	G-A	HET
SBS	Chr2	14310032	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24670
SBS	Chr4	11451413	T-A	HET
SBS	Chr4	2925604	G-C	HET
SBS	Chr5	12140692	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20710
SBS	Chr6	12651207	G-T	Homo
SBS	Chr6	737898	G-A	HET
SBS	Chr6	8615563	T-G	Homo
SBS	Chr7	28459550	G-A	HET
SBS	Chr7	3137685	A-T	Homo
SBS	Chr7	3137687	G-T	Homo
SBS	Chr9	21504183	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g37240
SBS	Chr9	9369984	A-C	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	534267	534278	11
Deletion	Chr3	4989388	4989389	1
Deletion	Chr10	5273308	5273309	1
Deletion	Chr11	6148001	6169000	20999	5
Deletion	Chr11	6173001	6213000	39999	6
Deletion	Chr4	6936895	6936899	4
Deletion	Chr3	8273578	8273583	5	LOC_Os03g15140
Deletion	Chr7	11099848	11099850	2
Deletion	Chr2	12344480	12344486	6	LOC_Os02g20870
Deletion	Chr2	13341930	13341931	1
Deletion	Chr4	18899360	18899361	1
Deletion	Chr1	20010086	20010087	1
Deletion	Chr4	28375116	28375122	6
Deletion	Chr4	29023719	29023730	11
Deletion	Chr1	42615517	42615524	7	LOC_Os01g73550

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	24217085	24217158	74

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	73161	77485	2
Inversion	Chr9	73162	77510	2
Inversion	Chr3	32204804	32399258	LOC_Os03g56530
Inversion	Chr3	32204812	32399256	LOC_Os03g56530

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1758407	Chr1	11145869	2
Translocation	Chr6	1758412	Chr1	11146207	2
Translocation	Chr9	6773224	Chr2	14238917	LOC_Os02g24570
Translocation	Chr7	25933310	Chr1	33195484	2
Translocation	Chr7	25934816	Chr1	33195483	2