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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16043739	G-A	HET
SBS	Chr1	20726175	G-A	HET
SBS	Chr1	2710363	T-A	Homo
SBS	Chr1	35558574	G-A	Homo
SBS	Chr10	1170481	C-A	HET
SBS	Chr10	885218	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02420
SBS	Chr10	9568712	T-A	HET
SBS	Chr10	9568713	G-T	HET
SBS	Chr11	10845900	C-T	Homo
SBS	Chr11	11179822	G-A	Homo
SBS	Chr12	10696599	T-G	HET
SBS	Chr12	16432877	C-T	HET
SBS	Chr12	19723919	G-A	HET
SBS	Chr12	21886140	G-A	Homo
SBS	Chr2	20888879	A-G	HET
SBS	Chr2	26392004	C-T	Homo
SBS	Chr2	3426749	G-C	HET
SBS	Chr3	13620744	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g24010
SBS	Chr3	13630457	G-A	Homo
SBS	Chr3	24381431	T-A	Homo
SBS	Chr4	3306232	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06320
SBS	Chr4	8366034	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14870
SBS	Chr5	21904530	T-A	Homo
SBS	Chr6	2616834	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05780
SBS	Chr6	7746973	A-T	HET
SBS	Chr6	7750222	G-T	HET
SBS	Chr7	18226425	G-A	HET
SBS	Chr7	19872431	G-A	HET
SBS	Chr8	2142075	G-A	HET
SBS	Chr8	27835798	T-G	HET
SBS	Chr9	15427872	G-A	Homo
SBS	Chr9	6931919	C-T	HET
SBS	Chr9	6931920	G-T	HET
SBS	Chr9	9126691	C-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1520289	1520294	5
Deletion	Chr7	7714287	7714296	9
Deletion	Chr3	8429540	8429541	1
Deletion	Chr6	13419001	13502000	82999	14
Deletion	Chr3	13614419	13614420	1
Deletion	Chr8	15812435	15812460	25
Deletion	Chr8	15975769	15975770	1
Deletion	Chr6	19900421	19900430	9
Deletion	Chr10	20067932	20067934	2
Deletion	Chr11	23104828	23104830	2
Deletion	Chr8	23529154	23529155	1
Deletion	Chr4	24485332	24485335	3
Deletion	Chr2	25919001	25979000	59999	9
Deletion	Chr1	35563158	35563170	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	17261873	17261874	2
Insertion	Chr1	37070894	37070894	1	LOC_Os01g63890
Insertion	Chr3	21387216	21387216	1	LOC_Os03g38530
Insertion	Chr6	13575829	13575832	4
Insertion	Chr7	4124573	4124574	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2551474	2912730
Inversion	Chr3	31125794	31327628	LOC_Os03g54750
Inversion	Chr3	31125836	31327639	LOC_Os03g54750

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1666276	Chr4	13119495	LOC_Os12g04010
Translocation	Chr12	4435702	Chr4	8894587	LOC_Os04g16360
Translocation	Chr8	22120253	Chr6	5949615
Translocation	Chr8	22120468	Chr6	5949613
Translocation	Chr11	22995454	Chr10	21784070
Translocation	Chr11	23724653	Chr4	5910471

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