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Mutant Information |
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Mutant Name | FN4116-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4116-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2710363 | T-A | Homo | ||
SBS | Chr1 | 16043739 | G-A | HET | ||
SBS | Chr1 | 20726175 | G-A | HET | ||
SBS | Chr1 | 35558574 | G-A | Homo | ||
SBS | Chr2 | 3426749 | G-C | HET | ||
SBS | Chr2 | 20888879 | A-G | HET | ||
SBS | Chr2 | 26392004 | C-T | Homo | ||
SBS | Chr3 | 13620744 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g24010 |
SBS | Chr3 | 13630457 | G-A | Homo | ||
SBS | Chr3 | 24381431 | T-A | Homo | ||
SBS | Chr4 | 3306232 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06320 |
SBS | Chr4 | 8366034 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g14870 |
SBS | Chr5 | 21904530 | T-A | Homo | ||
SBS | Chr6 | 2616834 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g05780 |
SBS | Chr6 | 7746973 | A-T | HET | ||
SBS | Chr6 | 7750222 | G-T | HET | ||
SBS | Chr7 | 18226425 | G-A | HET | ||
SBS | Chr7 | 19872431 | G-A | HET | ||
SBS | Chr8 | 2142075 | G-A | HET | ||
SBS | Chr8 | 27835798 | T-G | HET | ||
SBS | Chr9 | 6931919 | C-T | HET | ||
SBS | Chr9 | 6931920 | G-T | HET | ||
SBS | Chr9 | 9126691 | C-T | HET | ||
SBS | Chr9 | 15427872 | G-A | Homo | ||
SBS | Chr10 | 885218 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g02420 |
SBS | Chr10 | 1170481 | C-A | HET | ||
SBS | Chr10 | 9568712 | T-A | HET | ||
SBS | Chr10 | 9568713 | G-T | HET | ||
SBS | Chr11 | 10845900 | C-T | Homo | ||
SBS | Chr11 | 11179822 | G-A | Homo | ||
SBS | Chr12 | 10696599 | T-G | HET | ||
SBS | Chr12 | 16432877 | C-T | HET | ||
SBS | Chr12 | 19723919 | G-A | HET | ||
SBS | Chr12 | 21886140 | G-A | Homo |
Deletions: 14
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 17261873 | 17261874 | 2 | |
Insertion | Chr1 | 37070894 | 37070894 | 1 | LOC_Os01g63890 |
Insertion | Chr7 | 4124573 | 4124574 | 2 | |
Insertion | Chr3 | 21387216 | 21387216 | 1 | LOC_Os03g38530 |
Insertion | Chr6 | 13575829 | 13575832 | 4 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 2551474 | 2912730 | |
Inversion | Chr3 | 31125794 | 31327628 | LOC_Os03g54750 |
Inversion | Chr3 | 31125836 | 31327639 | LOC_Os03g54750 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 1666276 | Chr4 | 13119495 | LOC_Os12g04010 |
Translocation | Chr12 | 4435702 | Chr4 | 8894587 | LOC_Os04g16360 |
Translocation | Chr8 | 22120253 | Chr6 | 5949615 | |
Translocation | Chr8 | 22120468 | Chr6 | 5949613 | |
Translocation | Chr11 | 22995454 | Chr10 | 21784070 | |
Translocation | Chr11 | 23724653 | Chr4 | 5910471 |